GgaINT0073926 @ galGal3
Intron Retention
Gene
ENSGALG00000011982 | PDE5A
Description
NA
Coordinates
chr4:56228501-56230543:+
Coord C1 exon
chr4:56228501-56228682
Coord A exon
chr4:56228683-56230483
Coord C2 exon
chr4:56230484-56230543
Length
1801 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
AGGGCTCCTTTTCTCTTTAGGTT
3' ss Score
10.31
Exon sequences
Seq C1 exon
ACTTAGGGGTTTGCCAGCTTGTGAATAAGATGGAAGAAAACTCAGGCAAGATCAAGGCTTTCAACAGAAATGATGAGCAGTTTCTGGAAGCATTTGTCATCTTTTGTGGCTTGGGGATCCAGAATACACAGATGTATGAAGCTGTAGAAAGAGCAATGGCCAAACAGATGGTGACATTAGAG
Seq A exon
GTGAGCTCAAAAACTAGGTGATGTTTGATTGGCACAAAACAGATATTCATATTCTCCAAAACTTGCCTGTTCTACACATAAATGCAACTATTTTCACATGAACAGAAATTGTTCTCCCTCATGAGAACAGCATTTGGCCTGATGAGTTGCACAGGAATTTTTCTGCTTGTTTCCATGTCTCCCAGCAGACTATTTTATTTGGTAGTGTATTTTAACTTGACTCAGGAGACTTAGCAGTGAACTGGACACATCTTTTCCTTTATGCAATGCTACACATTGGCAACATAGTTAGTTTGTTCTGTTGCGTAGGAAGAGGAAATGGTTTAGGGGATTAGGGGCTTCCTTTTCTTGTCTGAGGTTTTGTGTGATGATTTTGGCTCAGTCCTTTAGACAAACTGGTTTGTGGAGCAACAACAGCATTATTGTAGGTTTTCAGCAATTTCCTCAAACTCCATCAAACCATATCAAGATGAACGCCATCTAGTCTCAGCCATTGAATTGGTTACTGTTAAGTTTAATAGCTAAAGAGGGCTTTAGTTAGAGAAGCTGAATCACTCAGAGGTGATAACTTGAAGCTGAATGTGAAAAATTTGTAGACTTTGGATCTCCTAACAGTCTTTATGTAAATAGAGTATTTGGAGGATTCTAAAATGTGGATTATGTACCCTCTAGCCTATAAAAACAGGAAAAAAAAAAAAAAAAAAAAAAAAAACCATCACCACTCTCAAATAAACCTGTATAAAATGACATTAGATAAAAAAGTAGTAAAACTGTTGTCAAAATAATTTAAGTACTTCAAAAAGAAGCTGTTTGGTTACATGGCAAATTAGCAATTCTTTCTCTTACCATAACGCTTTACAATATATGAAGTCCATACCTATAACTTCCATAAGAAGATTATAAGTTAATACCATGTATGGGAACTGTTGAATCACAGCTTGAACCTTGGATGGACCACCTGAGGCAAGCACTGAGTCACCGTGGGAGCACAGGTGAAGGCAATTCAGCTGTGTGACCGGAGGGGGTGGAGCGTGGCTGCACCTCTCCTAGACCCCATGTAAGGGCTGACTGCCACTGAGGAAGGATCTTTCTCTGGAGATCATTCTCTTTGGAGTTTTTCTGCAAGCCTACAACATGGATGAGCATTTCATTTATTTCTGATTATTGCTTCCCACTGTGATAATCTTTCTAGCTATACAATCTGTAGATACCAGCCTAACCATGCCACTTTGTGTATTTGTTGATTGTACACACCTAAATTGACTTCTTTATAAAATATTTTTTCCTTTAGTTGTTAAAAAAGTCTGAAACATTTTCATGTTCTGAGTTCTCACAACTGAAAAAATATGAGCATATTTTGTTAATTTAAAACACAGATGTTTTCTTTTAGACTTTCCTGCGGAATTTCAGTTAAGGCAAAATTTTCTTTTATGTCTGAATAAACTCCTGAAAGGATTATTATGGCAACAACGTCAGGCACATAATTATAGCTCTTTCATGAATTATTTGTCTTTGAAAGTGGGGCATGAAAACTTTCCAAAGAGAAAATCAGAGTTCTTTGCTCATTTATAGAAACTATTTACGTTTTCTTGGCCTAATTATATCAAGAAGATTCTGTGCTATGGCAGATCTCTCCCCACATGCTTTCAGAACTTAAAAGCAGCGCAGGCCCTGCAGGGACTCCACATTTCATCAGCAAGAGCAATGTAATGCAGCTGCATACTGAAAATTCTGCTTGCTGAAACCCTTTGTTTTATCACATTGCTCTTTTGATTGTACTAAGGGCTCCTTTTCTCTTTAG
Seq C2 exon
GTTCTCTCATACCATGCTTCTGCTGCTGAGGAGGAATCAAGGGAGCTGCAGGTAACAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011982:ENSGALT00000019550:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=PD(30.0=63.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAGGGGTTTGCCAGCTTGTG
R:
CTGTTACCTGCAGCTCCCTTG
Band lengths:
238-2039
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]