BtaINT0109195 @ bosTau6
Intron Retention
Gene
ENSBTAG00000024888 | PDE5A
Description
Bos taurus phosphodiesterase 5A, cGMP-specific (PDE5A), mRNA. [Source:RefSeq mRNA;Acc:NM_174417]
Coordinates
chr6:7067735-7070187:+
Coord C1 exon
chr6:7067735-7067818
Coord A exon
chr6:7067819-7069833
Coord C2 exon
chr6:7069834-7070187
Length
2015 bp
Sequences
Splice sites
5' ss Seq
GAGGTATTT
5' ss Score
7.63
3' ss Seq
CTTTCTTCCTCTCTCTTTAGGCC
3' ss Score
13.71
Exon sequences
Seq C1 exon
GATCTAATGAACCGGGAGAAGAAAAACAAAATCCCAAGTATGCAAGTTGGATTCATAGATGCCATCTGCTTGCAACTGTATGAG
Seq A exon
GTATTTACTATGAAAACTACTAGACTTTTGACAGTGTTATGAAGGAAATTGAAGCAATGAACATCAGGCACATTTTTTTTTCTTTATCTGTAATCAAGAAACTAGAAGTAAAATAATCAGGACATTTCTTTTACTAATGAACATGCTGTTTGTACTGAACAAGGAACACATTTTATATTTACTATTTCTCAAAAATGTCAATTCATTGATGTATATCTAATGAGTACCTACTGCATGCTAGGCTCCAGCAAATTCATGTAGCGAATGCTGAGAAAAAGTATGTGCCAGTGCTACACTCAAAGGAAGTATATTCTGCATACTCTATGTTAGCATATTCTTTTTAAGACTAAATTTTGGCCTAAATAAGGAAAAACAGTTATCTAACTTCTTCTCATAGGATGACTTTACTACTGTTAAGAAAATTTTTATGAGGATTACAGGAAGGCAGCTAGGAAAATATTGCAGGTTCCCATTTTCATATACTTGTTAGTTTGGGTTTTTTAAATTATTCTCCCTAACATATCCAACTGACTAGTTTAGATGCTATGCCCCAAATACAGAAAGTAGATGCTGTCCTTGTCTTTATACATTTAAATAGGAAACTGTCTTTAAGTATTTGGGGAAAAAAACATTTATCATAGGAGGAATCATAGACTGCCAAGACCAGAAGAAAGGCTAGAAATTTTTTAATCCAGACATTTCACAGATTCAGTCATTGAAATCTGTAAAACGTCCATCTCCAGGGAGATGGAATGCTTGTCCCAACTAGGTAGGTAGTGGGAGAACTGTGTTTAGAGTTCAGTTCTCAGCCTGGGCCCCAGGGTTCTAGCCATCAGATGAATTGAAGAAAGAAGCTGTGGCTGATGAGGAAAAAGGAGGGAGGGATAGGAGAGACAGCAGAAGAAAACAGGATGAAAGAACGCGTGTGAGGCCCCAGCACCACCTTCTGCCCTCCCTTCTCGGCAAGCTGGCTGTTTACTGCTGTGCAGAAGCCTTCCCAGCAGCGTCTCCAGCACCTCCCAACAGTCATCCTTTCTGTAACAAATGCCTTCCTTATGGACTGGATTAAGAGTTCCTCAGCTGCAGATACTAATGTCTCTCTCCATTTTTTCCCCATGCCCATAAATATAGTCAAATCACCCATTATAATGGTGATTATAATTTCATCCTTCTACATTTCCTATTCATTTTATTTTAATCTACAGTTAAATTCTATGTGATATAGACAGACATTTTTACTATTATTACAGAAGTTATAGGTTCTTATAGAAAAATCAGAATAATAGAGAAGCGAAAAGATAAAATCACTTATAATTCTACTACTGTTATTTTAGTGCATATTCTTTATGACATTTTCATATATTTTTCATTTAACAAAAATTGCTCTTTGCAATCCATAATAGAATGTACATCTTTCTGTTTCAAATGTGTTTTCTATGACAGCTTTAATGGCTGCAGAATAGTAACACAATATTTCTAACCCTGCTGTTGGGTATTTAAGGCAATGTTTGTCTATGACACAGACATCTACAGTGAATGTTCTTGTAAGCTAAATATTTATGGAAATATAGTTGGTAAATAATAATGCCATATAGAGTTTAATCTTTATTATAATCTTGGATAAAAATTTAATGTATATTGGATAAAATTATTTTATAGAAAATCACAAAAACTAAGCATCCCCCCATGAAGTCAACACCTAGAGAGAACCATCTGTAGTACATAAAAGCAAATGGATTCTTTCTCTACGGAGCCAATCCACACAGATCTGTCTTCACTGCTTAATAATGTTATGTTGAAATGTGTGCATTTCCTCTCTGTCTCAGCATGTGTTGCCCGTCTGTATAGCTTAAGAGGAGTCATTCATAAATGATCTGTGATCACAGCTCTGTGAGAACCCCAGCAGTGGGTCTGCTTGGGAAGTGAGTGTGTGATGTGACCCTCTGGGACAAGCCTGGGGAGAGGCCTTATTTCCCGGTACCATCTAGTCACCGGCTTTCTTCCTCTCTCTTTAG
Seq C2 exon
GCCTTGACCCATGTGTCGGAGGACTGTTTCCCTTTGCTGGACGGCTGCAGAAAGAACAGGCAGAAATGGCAGGCTCTTGCAGAACAGCAGGAGAAGACACTGATCAATGGTGAAAGCAGCCAGACCAAGCGGAACTGAGAGACCTATTCATGCAGAGCTGAAGTTGACAGATGGTGTCTTCTGCAGTATGCCTAGTTTTGCTATATACTGTACAGATTTGGTTGTATACTTTGCCACTGCTGTATTTTTATTTTTGCACAATTTTTGACAGCGTAGCATGAAATGTTTTTAGAGGACTATTGCATATTTTCTGTACATTTGTTTTATGCCACTGAACTGAGATTATCAACGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024888:ENSBTAT00000014479:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.267
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(11.3=100)
A:
NA
C2:
PF0023314=PDEase_I=PD(7.9=41.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]