GgaINT0073936 @ galGal3
Intron Retention
Gene
ENSGALG00000011982 | PDE5A
Description
NA
Coordinates
chr4:56247390-56251454:+
Coord C1 exon
chr4:56247390-56247473
Coord A exon
chr4:56247474-56250841
Coord C2 exon
chr4:56250842-56251454
Length
3368 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGG
5' ss Score
8.98
3' ss Seq
TGTTTTACAATTTATTTCAGGCC
3' ss Score
8.11
Exon sequences
Seq C1 exon
GATCTAATGAACAGAGAGAAGAAAAACAAAATTCCAAGCATGCAGGTTGGATTCATTGATGCTGTTTGCTTGCAGCTGTATGAG
Seq A exon
GTATGGTGCCTGACAAAGAACTGGAAATATCTAAAACCAGAACTGTTCAGTGTAGTTTTCAGTAGTTGCACATTTAAACTTAGAACAAAATTTGGTTTTAGAATCCTAGTCAAAAAGATTTTTTTTCATATATTCAGTATGGTTTGTCATTTAGTTGGAGAAAGGATTATCTTAGCATTAATTGTATGTTTGGCTGATCAATGTATTTTGTTATAACACTTTTTAAAACCAATGGTAATTGCTGTGTTCTGTGCACTGGGTATTATGTCCCTGCGTTATGTTTTAGATTCTGCCAGTGAGATGCTGTAATCATTAGGGAAAGTCACAAGCACATTATGCTGTGCTATCTATGTAAAGAATGGTATCCACATATTGCATGATAAAGAGTGATGTTTAAGAAAGAGTTCTATAGCATTCAGAATTCTTAATGCAAAAGGTGATAAGCTACATATTGGAAATTCACCTGGGTTTAAAACTTCCCCTCCTTTTTTTTTTCTATCTCATCACACTTAAAAGCAGTGCATGAGAGCATTCATTGAAGCTTTTTTCTTTCTGGTCACAGAATGCATAAGGAAATACTTTGTCATAGAAAGTATGAAACAAAATATAATAACTCCTGATTTTCTTAACCAGTAAAGCACAAGGGCGAAAGCCCACTCACTGAGGCTGTAGCAAGTATTTTACAGGAACTAAGGTGAGAAAAAGGTGAAGAACAGATAGCCTCACTCTAAGCCTAATATTCCAATGGGAGGAACAAGGCGGTTATTCTTTTCTATCTCACACCCTTCTAAAAAGAATCCACATCCACCAGTTGGAAGAAAACAGAGGTAGAGGAAGGAGGGAACTACTGGCTGCCCCTGAAACTTGCATGTCTCTGCTCTGTAAAAGCTCTGTCAGGAAAATAGCACAAAAAAATAGTGAATAGCAATAGAATATAGCAGTCTGTGCTGAGAAACTTCACAAAACTGTTTCCATTGGTAGGTAGGCCACTGAAAGAAGTCTGAGTAGCTGTGAAAAAGGTATATACAAACAGAAAATTATTTGAACAGAAAATCTGAACAGGTTCAAATGTCCACAGCTCCATAGACTTAACTACTGTACTTTATTTGCTGGGGACAGCTTTACCTTCCCATTTTAAAATTTCCCTTTCTAAAAGTTTTAAAAGATCAGAAAAGATCAGAAAACTTTCAATTTTTTTTTACTCTGTAATATGCAATGAATTTCACATCAATAGTTACCAAATGATAGTAGTCCAAATTGAACCTAGCTCTTGTACAGTTCCTGTAAGGAAATGAGGTGTGTGAATAATTTCTAGCTATTTTGCTCCTGTTTTGTAACTGCAGCTTAGTTATGCTGCAGTGAAGACAAACCAATTCCTGGCTAGCAGCCAAGTGCACCTACAGATTTTTGGAGTCTTCACCCTTCTCTTTATCTAGGGAAGAAAGAAGATGCTGTGCGTGTAAGAGAAGCATCTTTTTGTTCAGCATATGTTGCCTCCTACATCCCTCAGCTACCACTCCTATTTTTCACTCTGTCTCAACATCTGACTTGAACTGGAATGGCACATAGCAAGCTGGCAGTGTCTGGGACTTTATATAGACTCAGAGTATGCCAGCACATGTCCTAACCTGAAAGAAAAGTGGGCAAGACTGATGTGCACGGGCAGAGAGCATTGAAAAGAATGGGGAGCCTATCAGAAAGTGACAAAACTAGTAACAGTACTAATAATTCCAAGGAAGGGGCTATGGTGTGCGCTGATGCAATGTACCTACCTCTAGCACAGGTAGGGGATACCAGGCGCTTACACAGAGTCCTTTTCTTCAATAGTAAAATATATAAACAATGTTACTTTGAAGAAGAACAAGCGCACATTTCACTCTTAAGCGTTCTAGTGCTAAAAGGCAAATAATAACCAGCGTTGTAACTACAGCCTTTTCACTACTCCTTAGCATTCATCCAGCCAGTAGGAACTTAACAGACAATGCAGAGATGAGTGCCCAATGAAGCACTGCAAGTATGTGACTTACCATGTTATTCAGAGTAGTTCTAATCCCAGTGAACTGATGCTGTGTGGCTTGTTCTAGACAGGTAGCCAGTAGCGTTAAACTGAGTGATCTAAATATCTTCCCTTTAAGTTCAGAAATCTGAAATAAAAAAAAAAATAATAAAAATTGTATTTCACTCCCACTTTTTTAATTGAAAAAGAGTGTTATATTTAGCAGTTTTAATGTTATTTAGATGTGCTCAGATAAATAAAACATGTATACTCAAGAGATATTTGACAGCCCGACTCTTCTTACAGAGGTGTAAATCAAGAATAATTCAGTTAAGTCTACTGGAACTAATGATGCTGCCTAGAAAGCAAAAAAGATTTATGAAGGTTTATACAAGCTGATAACTCACTAGAATACCTATGTAAAATTGTTCCTAAGTTACAGAAGAGTTGGATATCACTACCTCATGTTATTTGAATAAGACATAAGTTCCAGGTGAAATTCTGACTTTTGAAATATACACAATAACCAGCAGTGAGGCCAGGACTTTTCTCTGTGTACTCTGCGGTTGGTCATGGTAGTTCCAGAATCAGTAAACTCACTCCTGCCTGTGGATCTTGCCATCCAGCACTGTCTGAACTATCAAACTCCCGCTTCACACTTCTGAATAGTGTGACTTCATTCCAAATGTCAACAGAACCCTTAATGCAAGTTCTGTCATTATTGTGTGAGGATACGTATTCATCACTTCCACCAGAAAGAAAGAAAAGTACAAAGATGCTTATTGATCTATTTAATTTCCAATCCATTTTTTCTTCAGTCTGCTGTAGTATCACTGCCACATTATGAAAAATATTTGTTAGACTTCAGCTACATCTGTCCTGAAGAAGCATCAAGTGCCAAATGTAATTTAATTACTGGGTGCTAATTGTCTTGAATTCAAATATTTCTGGAAGAACTCTGAATCACTTGTGACACTGCCACATTGGTCACATTGACTATAACTGCTATTACCCTTCCAAAGTTATCTTTTTGACCAGCACTGTCATATATACAAAGAACTGGCTTACAAAGTCCATGCATACTACATCACTAGGAATCCTGGATAGGTCACTTGTGCATAATTCTGTGCAGCAAATTCATCATAGTTCTTTCTGCATGTATGTATCATGTATTACGTGAACACTGCCGTTCAGTCTAATCAGCCATGTATTCATGTTTGATGTGCAACAGGAAGATCAAAATATAAGTTCAATTTCAAGTATTGATAGACCTCATACTTCAGTCATTCTCGTCTCTTTAATATTCATTTTTAAGAACACTTATTTTGTTGTTACATATAAACTGTTTTACGTGTTTTACAATTTATTTCAG
Seq C2 exon
GCCCTAACACATGTATCAGAGGCCTGCTACCCTTTACTGGATGGCTGTAGAAAAAACAGGCAGAAATGGCAGTCCTTAGCTGAACAACAAGAGAAGAATCTGATTAATGGAGAAAGCAATCAAGCCAAACGGAACTGAGATGCCAATTTAAAAACCACAAGCTTAAGTCCACATAGAAGACGTAGTAATAGGGGAGTACTGCATTCTACTAAACACTGTATGGATTTGGATTATGTTTTTGCCACTGCTGTATTATTTTTCCACATTTCAATATATAGCATGACTGTGTATATGCCAAGATCTTATATTTCTTTTATTACATCTAAGTGAGATGGAAAAAGATCTGCAGAGTTAGCTTATACTAACCTATTCCACAAGAAGGTATGAGTGCAGTTTACTCGACTGTCCCTGAGAGCCTATTACTTCATAGATGTATATAGTTGTTCAGTGATTATCTTGTGGCCAGTATCTTAAAGACTACTGCATTTCGCACCTTTTTTCCTCTTTGAGTCTTGCTGTGTTAGGCTGTAAAAGAAATTGCCTGTTCTCTTCCCAGAGGTTCAGAAGAAAAACTGGGACTAATGCTGGCAAGCCTGATCCAACATATACTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011982:ENSGALT00000019550:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=NA C2=0.356
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(11.3=100)
A:
NA
C2:
PF0023314=PDEase_I=PD(7.9=41.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]