RnoINT0108884 @ rn6
Intron Retention
Gene
ENSRNOG00000014443 | Pde5a
Description
phosphodiesterase 5A [Source:RGD Symbol;Acc:620995]
Coordinates
chr2:227038192-227041576:+
Coord C1 exon
chr2:227038192-227038275
Coord A exon
chr2:227038276-227041017
Coord C2 exon
chr2:227041018-227041576
Length
2742 bp
Sequences
Splice sites
5' ss Seq
GAGGTATTT
5' ss Score
7.63
3' ss Seq
TTTTCCTTTCTTTTCCTTAGGCC
3' ss Score
12.49
Exon sequences
Seq C1 exon
GATCTAATGAACAGGGAGAAGAAAAATAAAATCCCAAGTATGCAAGTTGGGTTCATAGACGCCATCTGCTTGCAGCTGTATGAG
Seq A exon
GTATTTACAGAGAAAAATACTAGAAATACTAGACTGCTAAAGTTAGATTATGTTGTGAATTGAATCTGAAGTGCATTGAAAAGATTAACACTAGATGCGTATTTTTGCTTCTATGTCAAAAAACATAATTATCACTGGTATTGTTTCTTTTTGCTGATGAATGTGATGTCTGTACAGATGTAAAATGTAGGGATACATTTTACATTCACTATTTTGCAAAGGCATTGACTCACTCCGGGTATAAATATCTACAGAGTGCCTAGGGTGTGCTGGACACTGACATTAATTTAGGGGATGCTAAGAGGCGCATGATGGTGCTGTCCTCGAGGGGGATATTTCCTGCATACTCTGTGGTAGCATAATCTTGCTAAAGCTTAATTTTAGCTTAAGTACAAAAAATTGTCACCCGACTCTTTTTTTTTCACTGTCATATTATGAACATTTTTCTGGGGACATTTTAAAAGGAGGAGGTTACAGGAATACAGGCTCCGATTTCTACCCTCTGTCAGTTTTACTTCTTGGCTTTTTGTAGCTTTTGTTCTTCCAGCAAAAAACAAAACAAAACAAAACAAAACAAAAAACAAACAAAAAAAAACAAAAAACAAAAAACAAAAACAAAAAAAACAAAAAACAAAAAAACAAAAAACTTCAGTGTTTAGATGTTTATTATCCCACTACAGAAAGGAGATCATGTCTTTGTTTCTAAAAAGTGCAAATGGATTTAAGTTTTATTTATTTGAGAAATTATCCTGAAGTTATCATAAAAGGTTAAGGCCAGACAGAAACTACAATTTTCCAATCCAGACGTTGCAGATTCAATAACTGGATGTGTAAAGTTCTCCTTCCACAGAGAGAATATTCACTCCAAATGTGTAGTTAGTGCAGACCCCAACTGAGAATCCACTGCTTTTATCCTTATTCTGGGGTTCAGTGTTCTATTGCTGTGAAGAGACATCATGACCAGGCAATTCTTATATAGGAAAGCATTTAATTGGGGCTGGCTTACAGTTTCAGAGGTTTAGTCCATTATCATTGTGGCCAGAAGCAGCCAAGCACGGTACTCGAGTGGTTGAGAAGTAGAAAACTACATCTTCATCCACAGGCAGAGGGGGGAGAAGGAGGGAGGCAGGGAGGAGGGGAGGGAGGGAAGATAGAGATGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGCTGCTTGGGCTTGGGATTTTGAAACCTCAGAGTCCACTCCCAGTGACACATTTCCTCCAACAAGACCACACCTCCTAATCCTTCTCAAATAGTGCTACCCCCTGGTCACTGAGCCTATATGAGTCTATGGGGGCCATCGTATTCAAACCACCAAAAAAAGCATGGACAGGTTTAATACAGTCTGCTAATTAGGATGAGGGAGAAGGTAGAACAGAAGACACCAAAGGAAACTGAGGAAAAGGCCACTGCATGTCCACCTCTGCAGCACTGTTTCCCCACAGACTACAGGGTCCATTTGGTTAGTTTCCTCCTTTGTGTAGTTCTTCCTCAGAAGCGGCTAGGAGCAGAATTTTAGGTACCCTCAACCCTCCTCTGCATGACAGACACCTTCTCTGTTGGTTGAATAAAGAGCTTTTCTCAGCCGATGACACCCGTGGCTCTTGACTTTTCCCATCCCTGAAATCAATCGGAAAGAATTGTGTTGTCAGAAGAGCCGTTGTAGACTCCACTCTGTGGTGCGGTTTGTACGCTCACTCGTTATGCTGTTGGGAATTCTGTATGATCTTAAGTAGTGTTTTACTTTTACAGTGAAAGTAGTACATTTTCACTGCAAAGCAAACAGAACGCCCTGGGAGGCAAACCGGAAGATAAAGTCTCTCACGGTCTTACTATTTAGAGGTAGCTACCGATGCTGGTGCGTGTGCCGTAAGGTGTCTTAATGTCATTTAATAAAAAATTGGTTTTTGAAATCCATGATATAACACACATGGCTCTGTTACAGAGGTGTGCCTGAGACATTTGTGACGACCATCAAATACTTTTAAGATATTACTAAGCCTTGCTGTGACATTTGTCATGTCTCTACAAAGAAAGCTACAGCAAATGTTCTGGTAGCTAAATGGCACTGTGCTTGGTATATAATAATAACCTTTATTAAAATCTTGCATTATAAAAGCACATTGTATAAAGCCATTCTGTGGGAAAGCAACGGTACGGCCTCCCACGTCACCCTCTGGAAGTGACAGCTTGCATGAAGGTTAAGATCTACCTCAGTGAGCCCACACACAAAGCTCAGTGTTTACGAACTTTTAAGATTCGTTTTTATTTTTAATTATGCATGTCTTCTCATGGGTACCTGCAAAGGGGTACAGGCGTTCCTAGAGGCCAGAGGCAATGGACCCCTGGGACATTAGGCAGTTATGAGGCACCAAACATGAGAGCTGGGAACCAAACTCAGGTCCTATACAAGGAGCAGTATATGTTCTTAGCTGCCAAGCCATCACCGCCCCCCCCCCACCACCACGCCATCAAACTCCCTCAGTGTTACTTTGAAATACCTGTACTTTGTCTCTAAGTATGTCTCCTTAGCCGGATAGCGTAAGGGGAATCCGTGGCAAATACCCTGTGTATGTTTCTAGAACCTATGAGAATGCCAGCCGCGCCGCTGCTCAGGCAATGGATGTGGCCCTCGTGGCAAGCCTGCAGCAGCGGCTTCTCCCTAATTGTTTTCCTTTCTTTTCCTTAG
Seq C2 exon
GCCCTGACCCACGTCTCAGAAGACTGTTTGCCCCTGCTGGATGGCTGCAGGAAGAACAGGCAGAAATGGCAAGCCCTCGCAGACCAGCAGGAGAAGACGCTCCTTAATGGGGAGAGCGGCCAGGCCAAGCGGGACTGACCTTCTCCCCCTCCTCCCCTCCCCCACCCCCACCGGGTGTTCGAACTGCCCTAGGCCTGGTTTCGCCATACACTATGCAGACTCGAGTGCACTTTGCCACTGCTGTATTTTATTTTTGCACAACTTCTGAGAGCATGAGGTGTTTCAGAGATTGCTACCTACTTTCCGTGCTTTTGTTTTATGCCACTGAAGTGGAGCCGTCAGTCATGCCCACTCTAACACTTTGATAAGAGTGGTGTAAACTGCATTCCCACACGCAGCTTGGTTATGCTTGGGGAGTATGAATAACCGGCCTTTGTGTTTCTGAGTCACCAGTCTTTCAAACACGTTAGGAATCGTTCTCGGAAGTGGGTTAGGGGCGAACTGAATGTGTCCTGGGACATTTAAAGCCATCCTGAAATTAACGCTGAGTGGATGTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014443:ENSRNOT00000019638:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=NA C2=0.267
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(11.3=100)
A:
NA
C2:
PF0023314=PDEase_I=PD(7.9=41.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]