DreINT0111789 @ danRer10
Intron Retention
Gene
ENSDARG00000051915 | pde5ab
Description
phosphodiesterase 5A, cGMP-specific, b [Source:ZFIN;Acc:ZDB-GENE-060824-4]
Coordinates
chr7:57313345-57317030:+
Coord C1 exon
chr7:57313345-57313428
Coord A exon
chr7:57313429-57316769
Coord C2 exon
chr7:57316770-57317030
Length
3341 bp
Sequences
Splice sites
5' ss Seq
GAGGTACAT
5' ss Score
6.75
3' ss Seq
TGTCCTGTCCTGTCCCACAGGCT
3' ss Score
12.73
Exon sequences
Seq C1 exon
GATCTGATGAACAGGGAGAAACAGGATAAAATTCCCAGCATGCAAGTGTCATTTATTGATGCCATTTGTACACAGTTATATGAG
Seq A exon
GTACATGTTCTCTGCTCGTATTTATTCTGTTTTCATTGTAAACGAACCTTCTAGCAAAAACAAATACTGCCTCACCTACTGATCTGAGTTTCAAGTGCCACTTCCTGTTGGCTACCTGAGGTGAAATGTAATTTTGCCACGTTTTGGTGTAGGTTTTAAACTTAAATCCTTTTACAGAAAATAAGTGTCACCTGTTTTTGAGACTTCAATTAGAATACCCCTTAGATTGTTTTGATATTATAATAATAATATCAAAATAAGAACTAAATAAAAAACACTAATAATAATTCTACAAAAAACCCACCTGTCAGGTTATGGTACAGATTGCGAAGTAAATGTAATATATACAAATTTATTAGCTCTCCTATGAAATTGTTACTATTTTTCAAATATTTCGCAGCACTTTTAGCTTTTGTTTGCATATTTCTTTAAATGCAGTAATTTAAATAACTAAATTATTTCTTTTGTCTTTCCCTTGATGACATTCCATAGTATTTTACTAGTTATTTTGCATAAAATGAGTTTTTAGCATAAAGTGCTGTCTTAACAGGGTTAGGTTAACTTGGCTAGTCACTTGCAGCATGCTGGCGCAGTGGGTAGCACTGTCGCCTCACAGCAACAAGGTCACTGGTTCGCACCATGGCTGAGTCAGTTGGCATTTCTGTATGGAGTTTGCATGTTCTCCCGGACCGGTACTGGGTGTGCTCTGGTTTCCCCACTAGTCCAAAGACATGCGCTAGGTGAATTGAGCAAGCTACATTGTCCATAGTGTATGTGTATGTCCTGGTCCTCCCGGTTGGGGGTTGAGCGTTGGGCTAACGACCCACCTTGTAAAAATGAGATGTTATGAAACCAATAGGGTGCAGTTAAATATCAACTTCGATATAAACAGCCCTGCGAGTAAGTAAAGCAAATCATTAGTTTGTGCTGTATTATTATTCAATTATTTATAATAATAAAATATTAAGGGGGCTAGTAATATTGACCTTAGCAGTTAGTATTTTTTTTGTATTCCAGCCAAACTAAAATAAATTATATTTAAGAAGAGAAATATAGCAGGAAATATAGTGAAAATGCCCTTGCTCTGTTAAATGTCACAGAGCAAACATGTGAAAAAGTAATACAAATTTCACAGCTGGACTAATAATTTTGTTTATAACTTTATTTCTGCATTCTAAAAATGCTGGGTTATTTATACCCAAATTTAGGGGGGAAATTACCCTGCAGTTTATTCTAATATAACCCAGCATTTTTAGAGTGCATATAAGCCACACACATAAAGTATCTTTCATGATTAAAACAAACTTTTTTTTTCCTAGTGTGGCCGTGTGAACACTACAACCTTAGTTTTGGCCTCATGATGTCAGCGTGCATGCTGTTTTCTCCTTTCTGATTGGCCAACATGGCTGAGTTCACATCAAACATGGATGATGTGAGAGGCAAATCTTGCACGTTCACAGCAAACTTAGAGCGTATTCAGCATAGTTTGACTGCAAGATGGTAATCTGTCTTTGTTTGCATTTCACTCGCGAAATATACTTAGTTCATTGTTTGGTGTGAACTCAGCATAAGTGTCATTATCTTCGCCTGTTGGTTCAGCATGCCCTTAACATGCAGTAGGGCAAAAAAGTATTTAGTCAGCCACCAATTGTGCAAGTTCTCCCACTTAAAAAGATGCCTGAGGTCTTTAATTTTCATCACATGTATACCTCAACTTTGAGAGACAAAATAAGAAAGAGCAATCAAGAAAAATCCGAATATTTAAAGAATTTATTTGCAAGTTATGGTGGAAAATATGTATTTGGTCAATGACAAAATTTCATCTCGGTACTTTGTTATATACCCTTTGCTGGCAATGACAGAGGCCAAATGTTTTCTGTAAGTCTTCACAAGATGCCTCCATGCAGATCTCCTCTAGAGCAGTGAAGTTTTGTGGCTGGGCAACATGGACTTTCAACTCCCTTCAAAGTTTTATGATGGGATTGAGATCTGGAGACTGGCTAGTCCACTCCAGGACTTTGAAACGCTTTGTACAAAGCCACTCCCTCATGCCCGGGTGGTGTGTTTAGAATCATTGTCATGCTGAAATAGCCAGCCATGTTTCATCTTCAATGCCCTTGCTAATAGAAGAAGGTTTTACTCAAAATCTCATCATACATGGCCCAGATCAGTCATCCTGGTCCCTCTACAGAAAAACAGCCCCTAAGTATGTTTCCACCCCCATGCTTCACAGTAGGTATGGTGTTCTTTGGATGCAACTAGGCATTCTTGCTCCTCCAAACACAACAAGTTGAGTTTTGACCATCTGACATTCACCCAGCAGTGTGTTACTGATAGTAGTCTTTGTTACTTTGGTCCCAGCTCTCTGCAAGTCACTCACTAGGTCCAAGTGGTTCTGGGATTTTTGCTCAAAGTTCTTGTGATCATTTTGACCCCTTGGGGTGAGATCTTGAGTGGAGCCCTAGATTAACAGTGGTCTTGTCTGTCTTCCATTTTCTAATAAGTTCTCCCACAGTTGATTTCTTCACACCAAGCTGCTTACCTGTTGCAGATTCAGTTTTTCCAGCCTTTTTAGGTCTACAATTTTGTTTCTGGCGTCCTTTGACATATCTTTGGTCTTGGCCAGGGCTGTCAAACTCAATTCCTGGAGGGCCGAAGCCCTGCACAGTTTAGTTCCAACCCTGCTCCAACACACTTACCTGTAGGTTTCAAACAAGCCTGAAGGACTCAATTAGTTTGATCAGGTGTGTTTAATTAGGGTTGGAACTAAACTGTGCAGAGCTGCGACCCTTTTGGAACTGAGTTTGACACCTGTGGTCTTGGTCAATGTGGAGTTTGGAGTGTGAGTGTTTGAGGTTGTAGACCGGTGTCTTTTAGACTGATAATGAATTCAAACAGATGCCATTAGTACATGTAATGAGTAGAGGACAGATGAGCCTCTTGAATGAGTTAGAAGTGTGTAAGAGCCAAATACTTAATTTACCAAAGAATTTACCAATTCATTCATTAAAAATTCTACAATGTGATTTTCTGGATTGTTCTTTCTAATTTTGTCTCTCGTAGTTGAGGTATACCTATTAAAATTACAGACCTCTTGCATCTTTTTAAGTGGATGAATTTGCACAATTGGTGGCTGACTAAATACTTTTTTGCCCCTCTGTACATCAGTGCTTAATTCATTTGGACAGAATTTTTTCTTATTTATTTTTTAAATGAAACCTGAGAAAACTCTCTAAAAATACCCCTAGACGTGGGTTTCTAAAAATACCCATAGACGTGTGGACATGGCCTTAGTTATCATGTGCTTCTTCTAATAGTTTTTGTCCTGTCCTGTCCCACAG
Seq C2 exon
GCTCTGACTGGGATCTCTGAGTTCTGCTCCCCCCTGCTGGAGGGCTGCCGGAAGAACAGGCAGAATTGGAAGATTCTTGCTGAACAAGGAGAGGAAGCAGCGCTGCTAAATGGAGAACTGTAACTGTTCATACTTCCTTTGACTATTCTCGTCACTCCACACACCTTTTCCTGAGACTGAAGGACTGCATGACTTGGGTGTAATGACACCGATCCAGGCATTTCACCCAGCACACTGGAGCAGGCTTTAAAAGGTTAATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000051915:ENSDART00000138188:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(11.3=100)
A:
NA
C2:
PF0023314=PDEase_I=PD(7.9=46.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]