BtaINT0111563 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016594 | PIGQ
Description
phosphatidylinositol glycan anchor biosynthesis, class Q [Source:HGNC Symbol;Acc:HGNC:14135]
Coordinates
chr25:502771-505075:+
Coord C1 exon
chr25:502771-503459
Coord A exon
chr25:503460-504943
Coord C2 exon
chr25:504944-505075
Length
1484 bp
Sequences
Splice sites
5' ss Seq
TCGGTAGGT
5' ss Score
9.09
3' ss Seq
ATTGCCTCCGTGCCCTGCAGGGT
3' ss Score
9.71
Exon sequences
Seq C1 exon
ATGGTGCTCAAGGCCTTCTTCCCCACGTGCTGCGCCTCGGCAGACAGCGGCCTCCTGGTGGGACGGTGGGTTCCAGAGCAGAGCAGTGCTGTGGTTCTGGCTGTGGTGCACTTTCCCTTCATCCCCGTCCAGGTCAAGGAGCTCCTGGCCCAGGTGCAGCAGGCCAGCCAGGTGGGCGTGGCTGTGCTGGGCACCTGGTGCCACCGCCGGCAGGAGCCGGAGGAGAGCCTGGGCCACTTCCTTGAGGGCCTAGGCACCCTCTTCTCCCACGAGCCCTGGCTGCAGCTGTGTCGGGAGAGGGGCAGCAAGTCCTGGAACTGCAAGGCCACCCGCCGGCAGGGGCCCACGCCCCTCGCCCCTGCCTGCGAGGACCAGGTCATGCTCATCTTCTACGACCAGCGCAAGGTGCTGCTGTCACGGCTGCACCCGCCCGCAGCCTTGCCCGAGCGCCAGGCTGGGGATGCCACAGCCAGCGCGGGTGGCCTGGCTGCCGTCTTTGACACAGTGGCGCGGAGTGAGGTGCTCTTCCAAAGTGACCGGTTCGATGAGGGCCCCGTGCGGCTGACGCACTGGCAGTCAGAGGGCGTGGAGGCCAGCATCCTCGTGGAGCTGGCCAAGCGCGCGGCGGGGCCTGTCTGCCTGCTGCTGGCCTGTCTGCTGTCACTGGTCTCCGCTGCCAGCGCCTGTCG
Seq A exon
GTAGGTGTCCCCGGGGCAGGGCGGGTAGGTCGGGCCCACAGAGGCCAGACGGGCCCTTCTGAGGCCCACGCTGCCCCCGCACCCCGGTCTTGTCCCACGTCCCGTCCCCAGTGGGGGCTGCTCTCTTGGTGCCTCTTGCTCTGGGTGAAGCCAGGCTTCCCAGCAGCCTCGGTTGTTGCGTGGGACCCACTGGGGAGGGGACGCAGTGAGCCTCAGACAGCTCAGGCCTCAACAGGGAACTTAGGTGCTGGGGAGACCTGGGCTGTTCCGCACAGGGACCCCTGCTGGTCTCCCGGCACTTGCCCACCCCGTTCCCTGGCGCTGCAGGAGTGGCCGCACTGGGAGGCTGCGGGCAGTAGCCCCTCACTGTCTGCTGGGGGCTGGTCTCGGGCTTCACCAGGGCACTCCTGGCTGTGGGCCCTCTCCCTGTGAGAAGCCCCCAGAGGCCCCGCTGGGCGCGGAACAGCCATGCTGTACCCCAGGTCAAGGGGTTTGGCCTCAGGTCTGGGGACGGGCCTCGCCTACTCCCCAGGGGCTCTGGGGGCACGTGGCCCTGTCCCCACAGAGAGACCAGCAACTGTGTGTGGGCAGCACCTTAGGTTATAGGGGCTGCTAGTGTCTTGACCTTGAAATGAGTCATGTGACAGTGTCTGGGCTTGCTTGGGGGCACTTTAGAGAAGAGACGTTCCTTCGCTTTTGTTGGCTTTCAAAGAACGCAAGAACAGCTGCTTGCGGCTCGAGTGCCCCCAGTCCCGAAGACCCAGAGGCAGGCGCTAGGCCTTGGTGGCCATCAGGAGCCCCAAACATCAGTGTGAGGCGTGGCTGTGGCTGCAGGAGCGAAGTCCTGGGGGGCTGACCTGGGCCTTGGGGAGACCCTGCCCATCGCCTTCCTTCCACTGGGTGGAACGGGAGTGTGCTGACTGCATTTCTCTCTGGGAGTTGGGTCAAAGTCTAAACCTCCAGGGTCAAGGCCCCCTCCCCCCGGGGCCCTCAGCGTGCTCCTTTGGCGGCCCTGCACGTGGCAGGCGCCCCGTCGGCCCCTCCGGCCAACAGCAGGGCTCTGGGCTGCCCCGGACTCAGGCGCTGGGTTTGCCGTTGGACACTTGGTTCACATTCGCTTGAGAACACATCCTCTCAATGTCTGCAGGTCTGTGAAGCGTCTGGTGCTTCCTTTGCTGCGTGAGGGGTCAGTCGTGTTGGGCTTGACCCTGGACACGGTCGTCTGTCCAGCAGGTGCTCAGCTTCAGTGCTTGGAGTTAGCACCTCGTGTTCCCAGTTGATAGGAGCGACTGTGACCCGCACTGGGCTGCCCACAGGGCCTCCCCTGTGTCCACAGCCCACGGAGTTCAGCAGTGTGGCCATGGGTGTTTGGGGCCGCCAGGGCCTTTTCCCTTTGCACGTTGAGGGGTAGTAGCCGTGACTGTGGCAGCCCCAATGCAGGGAAACCCGAGGTCCCGAAGGCCTATTGCCTCCGTGCCCTGCAG
Seq C2 exon
GGTGTTCCGGCCGTGGCCACTGTCCTTCATCTGGAGCAAGCTGTCTACCTGCGAGCAGCTCAGGCATCGGCTGGACCAGCTCACGCTCGTCGTCAGTGCCCACAGGGCCGAGGGCCCTGCCCAGCTGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016594:ENSBTAT00000022073:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACCAGGTCATGCTCATCT
R:
CAGATGAAGGACAGTGGCCAC
Band lengths:
355-1839
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]