RnoINT0111133 @ rn6
Intron Retention
Gene
ENSRNOG00000020140 | Pigq
Description
phosphatidylinositol glycan anchor biosynthesis, class Q [Source:RGD Symbol;Acc:1359535]
Coordinates
chr10:15297070-15300531:-
Coord C1 exon
chr10:15299833-15300531
Coord A exon
chr10:15297202-15299832
Coord C2 exon
chr10:15297070-15297201
Length
2631 bp
Sequences
Splice sites
5' ss Seq
TCGGTAAGT
5' ss Score
11.78
3' ss Seq
AGCCCTTACATTCTCCCTAGGCT
3' ss Score
9.6
Exon sequences
Seq C1 exon
GGCCCCCGGCATGGTGCTCAAGGCCTTCTTCCCCACATGCTGTGCCTCAGCAGACAGTGGCCTATTGGTGGGACGGTGGGTCCCAGGACAGAATAGTGCTGTGATCCTGGCTGTGGTGCACTTTCCCTTCATCCCCATCCAAGTCAAGGAGCTCCTGGCCCAGGTGCAGAAGGCTAGCCAAGTACAAGTGACTGTGCTAGGCACCTGGTGCCACCGTCAGCAGGAACCAGAGGAGAGCCTGGGGAAATTCCTAGAGGGCCTGGGTGCCATCTTCTCCCATAATCCCTGGTTGCAGCTATGCCGGGAGAAGGGCACCAGATTCTGGAGCTGCAAGGCCACTTACCATCAGATGTCTAGCACTCTGGACACACCCACTGAAGACCAGGTCATGCTCATTTTCTATGACCAGCGCAAGCTGCTGCTCTCCTGGCTGCATCCACCTCCGGTACTACCTGACTGCCAGATTGGAGACAGCACAGCCAGCACTGGAGGCCTAGCTGACATCTTTGACACAGTGGCACGCAGTGAGGTTCTCTTCCGAAATGACCAGTTTGATGAGGGACCTGTGCGCCTGAGCCACTGGCAATCAGAGGGAGTGGAGGCCAGTATACTTGTGGAGCTGGCAAAGCGGGCCTCTGGGCCTGTCTGCCTGCTGCTGGCTTCTCTGCTGTCCCTGATCTCAGCAGCCAGTGCTTGTCG
Seq A exon
GTAAGTGCCTCAGACAGGAAAGGTAGAATAAGAAACTGGTCCCTCGAGAACCACAGGCTCTCCCTTCAGTGTGCAGTGGCATCGATAGCCAGAGGGTCCCTCCTGAGGCTGGTGTTCCTGGGACCCAGTTCTCGTCTTCCCTTCCCTCCCTTTGCATGGTAGAGCATATCGTAGTAAAGGCTGCTGTTCCTGGAGACCGACTGTGTGAGGCCCACCTAGTTGGGTGTAGAATGAATCGCAGACAGTGCAAGCACCAAAGAGAGAACTCTGATGAGCACAAGCCTAGGTTATTGCACTCCTAAAATAATTATATGTAGCTGGACAGTGGAGATGCACACCTTTAACCCCAGCCCTCGGGAGGCAGAGGCAGGGGGATCTCTGTGAACTCAAGGCCAGCCTGGTCCACAAATCAAGTCCAGGACAGCCAGGGATATTATACAGAGAAACCCTGTCTCAAAAAAAAACTACGTATGTATGAATGTTTGTCTGCATTTATGTATCCTGTGCATCCCCAGTCAGAGAGAGGGTCATGTGGGTGCTAGGAATTAAACCTTGTCTTCTGCTTATCTCACTAATTTTTGTGTTTGGGACAGGGTCTCAGCTATATAGTCTTGGCTGGCCTGGAACTCGCTATGTGGACCAGGCTGGCCTCAAGTTCTGCCTGTGAGAGTGCAATACCTGCCTTGCCTGCAGTGACCTGTGAGGACACAGAACTGCCCACTCCCCTGCTTTTCTGTTTTCCCCACAGCTGGCTTCAGGGGCAGTTCCTCTCCAGGCCAGCCAGTTGTCTGGGGTGGTGGTACTCACCCATGATCTCTAGAATCATGGGTTGCTGGCCTGGTGAGCAGTTTGGAAAAGTCCCCAAGTCCTTGGAATGCTGGGTAACCCTAGGTTCTTTTAGTTTAGCTTGTGAATGAAGAATGAGGGCCTGGAGGCCCTTTTCTCTCAGAGATGATGTTCGTTCTCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCCCTCCCTCCCTCCCTACCTACCTATCTACCTGTCTCTCTCTATCTCGAGGCAGTGTGTCATTGTGTTGTCCTGGCTGACCTGGAAAACTCTTTGTGGACCAGGCTGGCTTGGAACTCACAGATCCACCTCCCTCTGCCACGGGGATCAAATGTGTGTGCCATCATAGTACTGGACAAACCCTGTACCAGATGAGCTATATCTCCAGCCTAAGATACTGTTTCCTTGGTGCTGCTGCCCATAAGGAGCTGTAGGCTCGCCCCCTCTGTCCTCCCTTTAGATCTACAGACTGGTTTCTAGTGTGGGGTCTGACTTGCCTTTTCCAGGGGCTCTGGTGACCTTAGGATACCGTCCCAGAAAGGGAGCCCTGGGTAATCTATAGGAATACACTTAAATGCAGGAGCTGCTGGGTATCTTGATGTATGGTGTAGACTTTTGTGACAACCTTAGAATTAAGGTGAAGATATGTCTGGGCCCAGGTGCCATTATATCACAGATGGTCCTTAGTATTTCTTATCAAGAGACTCAAGGAAGGCAAAGAGATGCCTGTGTATTAAATGCAGACACCAGCCTGTCCATCAAGCAAGAGTCAGCAGTTATGAGTGCTGATGTACAGGCGAAGCTGTCACTACAGTAAAGAGCTCCTCTCTACCTTTCCTGACTTTGTGCCCTTCTCAAACAACCCAGGCGTGGAGCCTGGGCCATGAAGGACTGACCCGGACCCTGGAGTTTCATGTGCCCAGTGAGAGGTCACTGTGGCTGGCTGTTTGAAAGGGAAGGCTCTGTTGAGTACAGTTCGGAATGGACTCCTAGCTGCACTGTGGAAGAGAGGCCTTTAAACCTTCCAGAGTCATGTCCTGCTCTTTCCTCCTGAGGTTACACACAGCTCTGCACATCCCAGGGGCCCTTGGGTCCTTCCTGTCTCCCGCTGCTGCTGTTCTGTTTGTTACATGACCGCAGTCCAATTGCTATCAGGAACCTTCTTCGTCCTTGACTTGAAGACATCTCTTGTTACCATCCAGTAGGCAGGGCAAGTCCTGGGTGGATGGGAGATGACCTAATCCCCTTCTCCCCTACTTTTAGGCTATCTTTTGTGGGGAAGGCAGCCCTAACTAAGCTGGTCTTGTACTGGAGATTTGTTTGCCTCATCCTCCTGAGTCCTGGGATTAAAGGCGTGTGTACTCATGCCTGTCTATCTTCTCAGCCATCTTTTTTCTTTTCTTTTCTTTTCTTTTTCGGAGCTGGGAACCAAACCCAGGACCAAGCGCTCTACCACTGAGCTAAGTCCCCAACCCCTCTTCTCAGCCATCTTGATACTTATCTTTGCATTGACTGGTGAGCTCAGGTGTGCCTGAGGCTCTGCGAGGGGTCCAGCTCTGTGGTATCAGTAAGCATGGTTGAGGGTGGGGGGTCAGGAAGGGGCTGTGCATTTCACACCTATGTGTCCTTGCTTGGCTGTGTTGGTCATCACATTTGCCTGGGCCTTGCTGAGCTTTGAAGTGAAATCAAAGGGCTCCAGGTGAGTAGCTCTGGTTCTTCTTTCTCAAGTGAGGGACCTTGGCTGGGAAGGAACCAAAGGCTGGAGTTGTCAGTCTCAGCCCTTACATTCTCCCTAG
Seq C2 exon
GCTATGGAAGCTGGGGCCTCTTGCCTTCATCAGAAGCAAGCTCTCCACTTGTGAGCAGCTCCAGCACCGGCTGAAGCACCTCTCATTCATCTTCAGCACCGAGAAAGCCCAGAGTCCCATGCAGCTGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020140:ENSRNOT00000027353:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0502410=Gpi1=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]