GgaINT0015099 @ galGal3
Intron Retention
Gene
ENSGALG00000001985 | PIGQ
Description
NA
Coordinates
chr14:14260753-14266938:+
Coord C1 exon
chr14:14260753-14261417
Coord A exon
chr14:14261418-14266806
Coord C2 exon
chr14:14266807-14266938
Length
5389 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TTCCTGTTGTGTTTCTGCAGGGT
3' ss Score
11.1
Exon sequences
Seq C1 exon
ATGGTCCTTAAGGTCTTCTTTCCTTCGTGCTGCTCCTCGGCAGAAAGCGGCATTTTGATCGGCCGCTGGATCCCAGAGCAGAGCTCTGCTGTCATCCTCGCCGTGGTCCATTTCCCCTTCATTCCTGTTCAGGTGAAGCAGTATCTCAGGGAAGTCCAGCAGGTGACCAAGGTCAGCGTTTCTGTGCTCGGCTCATGGAACAACAGCAAACAGGAGAAAGAAGAGAGTTTGAGTGAGTTCTTGGAGGACCTTGGGACGATATTCTCTCATGAGCCGTGGATTCAGATAAGCAAAGAGGGAGACAGCAAATTCTGGAACTGTTCTACCCTTCAGAAACAGCCTGACAACCACAGAGAGGAAGAAATCATCTTAGTGTATTATGACCAGCGTAAAGTCATGCTTTCCCATCTGCACCCCCCCTCGGACACAGCTGACCTCGGGGCAGAGGATGCCTCCAAGCTCTCTGCCATCTTTAACACAGTTGCAAGCAGCAAGGTGCTCTTCATGACAGACAGATACGACGATGGGCCCATTAAGATGACCCACTGGCAGTCGGATGGCATTGAAGCAAGCATCATTGTGGAGCTGATGAAGCAGGTCTCGGTGCCTGCCTGCATGCTGCTGACGTTCCTGCTTTCCCTTGTCTCTGGGGTCTGCAACAGCAG
Seq A exon
GTGAGTGCTGCGGCATCGGCCTGCTTGCATTTGGTGGGGAGATTAATTTGTGTGTAGGCATCGCAGAGCATCATGAGGTTCCTGCTAAAACTCTTTTGTTAAAGTCACTACCAGTCACATTGCATCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTGGAGACAGCCAAGAGGCATACTTTTCTGATCTATCAGATCATCAGAGTGCAAAAGGATGGGCTCCTGGTGACAGGTGATGCCAGCTCCTCTCATGCCCTCTAACCATAGCAGGCTGTGGGTCAGACTGATGGACATCATGGGCAGTCCCAGCACATCTGCAGACCCCGTGCCAACCAGTGGCATGTCAGGTTCTGTGGGCAACAGAAGGCTGAGGATCCCCTGGATAAACCTGCTGTCGGAAACAGGCTGCTGCAGAGCTGCTCTGAAAGTGTGGGGAGCTCTGCTGAAAGCACAAGGCAGAAACCCTTAGACCCTTGGAGGTGTGGGGAGGTTTTCTGGGGAGGCACTGAGCTGTTGCCCACATGCAGCAGGGGTAGCTTGACCCTGCTTCAGTTTCATAATGGCTGAAATGGTTTTCCAGCTCTTACGTGGCTGGCAGACCAATGTGAGGGTTTCCTTAATGGTTTGATAGCTGAGACTCTTCAGTCCCTGTTTGCTGTGGAAACCTCACTGGCTAAATACATCATTTAATAGTATGTCTGAACCCATCACTTCTTGGACCTCGTAGCAGTTTGCAGGCAGTGCTGGTCTGTGTGAAGCCTTGGTGAGATCCATTTGTGACAACAGCGAAACTGAGTAGGATGTTTGAAATGTAATGCGTGGCAAGTACGTGCTCTAAAGAGGAATTCTGAGCAGATTTGAAGGGTAGGAGCTTCTGCATCCAATGCATGCAATGCTGAATAACACGGCTGGTCGGCCAGCAGCCAGCCTGGTGAGTACCAGCATGCCAGAGTGGGTGCTGGAGATCAGCTTCCAAGCTGCAAAGGGACACTTTGATTGATCAGATTTGGATAACAGCTACTGCTGTAGTCATGGTTAAATCTTCTCAAGTGCAGCCTGAGGGTATGGGGAGCAGACTCTTTTAACAGGTTTCTAATTGTATGATGCTGTCATGAAAAATGACAGCGCAGCTCTTCATATGCAGACATTTGCTGAGCAGTTGGGTTATGTGCATTGGTACATGAAGGGAAAACTGTCCATTTTTGGACTACCCTGCTGGAAGAGATTTAGGGTCAGAATAAAACCTGTTGTAATCAGGAACCACCAGTGCCTGCTGGGGTGGCTGTGCAGACATGGACCGTGCACTAGGCTGGAAGTGGAAGTGAAGGCAGAGCTTTGTGATTGGATAGAAGGTTGAAGTCAGCTCTGAAGGTCCTTTTTTTTTTGGCTGTGTGTGGGCTGTGTTCAATGACTAACAAGCGGGTGATCCTTTTCCATCCAGGCCCATTGGGGTTCAGACTTATGGTCAGCTTAAGCCCAAGCCTCACGGGTCTCCAAAAGGCCGTAGCCCAAGCATCACTTGGGAGTTTGAGCCCGTTCCTTGCAGCCTGGCAGGCTGGATACAGGAAGCCACAGCCTGTTTATCAGCAGCTCTTCTAATTTCAGCTTTTACTAAGCCCACTGTGGATGTGTGAAGCCCAAGCAGCCGCTTTGCTAGCAGCCAGCTGCACATACAGAATGCATGGCTCACTGTGCTTAGACCTGGCCTGAATTTGTTCTTAACCTTGGGACACAGATGGAGGTTTCTTTCTGCTCTGGTTTTATTCACCTGTAGCACCTGCATGATATTTGCTTATTTTGCCAGTGGTTTCAAACATCATTCTTAGAGGAGATGGATTAACACCTGCATTTATGACAGAGATTCTGCTCGACCTTCTGAGTCAGTCAGTGCAGTTTAGTTCCATTTACCACTTGGTGTGTAATACAGCTGAATTGTGCCAATATCTGCAGTGCAAGAGGGGTTCAAGGATGGCATGTGTAAGCATCCTACCAGCTAACACCACTTGCTCCAGGATAGCTGCTTTGGATGGTTCCCTTGGTTTTTGTGGGGGATTGGATCTTCCTGGGGGAGGAAGGTGAGGAGGCCTTGCTGCCCACACCTCTCCGAGCACCACATGCAGAGGCAGAAAGGGACCTGAAATGGGACCGGTTGGTAATGGAGCCATTCCCCAGTGAGGCTTCTTGGGTGCCTGCTTTTACTTGAAGGGTTTTGTGTCACCCAGGCTTTAACTTACAGGAAATGAGCTACTGGCTATATCATGTTTTGGGTGCCATGTGGACAGGTTGCTGTTCGCCTGGGGAAGGTCCTTCCCATGGGCAGCTTGGTGATGGGTTCTCAGTTCTGAAGTCTCCTTCCCTTTCTCTGATGCATTCTCTGTCTGCAGTTACTGCAGTACTTCTTTTGTCCCCAGATCCCTGTGATCCTAAGGGACAGTTGGATCTGAGGAGCAGAAGGAGAAGTTCAGTGACATCCGCTCAGGCTGCAGAGGCCTGGGGCTGCTGCTGGAGAGCCCTGTGCTGTACGTTTGTGCTGGGGAAGTGGGGAGGTATCCTTAGAAATCAGAGAAACTGAGCACCGACATCAATCCGACCTCACCAAACACGCTCTGATCTCAAATGAAGGCATTTCTTCAGCACCACCTTGTGCTAAGCAGGGCCCATTGCAGCTCAGCCTTCAGAGCGTGCAGGATTTCCCCAGCACGGGCAGGCTTTAGGGAGCTGTTTGGAGCAGCAGGATGGTTTGTATTGGGGTAATAAACTCCATGCTATGCTTTGTTCTAAAAGCCCTCTTACCGTGCTCTTAATGACTCCAGGACCTCTGTCTGATGCCTCGCCCAGAAGGGAGGCTTTTTGTTCCTGTGGTTTCTAGGAAAGAGCAAAAAGAGAGCCAGGGGGGTCTGCTGAATGGGGCTGTAACGTCTGTGTGTGATCTGGGCCCCAAAGGCTGCTTTCCATCTGATACCTGGAAAAAAAATACATTGGAAACTGAAGATTTACTCCTGCAGGCTATGTTAATTTATTTCCTTCTATTTGGAGGTACCCCAAAAGTGTCCTGCTGTTTAAATAAAGCAAGTATACATCATTCATATTTTATGTATATGATTGGTTTTCCTTTGCACTTGTAAAAATCATTGCATATACTGTGTGACAAACAGGTGGGAGCATCTATGGCAATGCATAGTTGCCATGCATAGGGAAGGAGACCACGCAAGAAGTATTTTTGGCTTTCTTTCTCATTACTGTTGCAGATGGGAGTTTCCATAGCACATCTTGCAACTATTATATCAAGCTTTATGCAGCATGTTTGTATTTTTATTTAAATGAATGTGTACATACTGACTTGCCAAAGAAAGAGTGTAAGTGGAGCAATTCTGTGCTGTAGCAGAGGTTTGGACTTGGAGCCACTGGGGGGAAGGGGAGGGGAGGGGAGGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTTCCTGGGAAAGGTCCAGGCTGGAACCAACCAGTGGCATTCCATTGGTCTCTAAGGTTGGAAGGCTGAAGATGAAGAGCTGAGTAACTCTTCAAGTTTAAAAAGAATGATTCCATGTTTTTGCTATTCCCTGCACTTTTGGATCACAATGTTTCTGAAAGTAGAGTGGGGAGGGGGAAGAGGACTTCAGCACCTTGCATGAAGTCTGGTCAAAAGGGCTTGGGAAGGTGGGGGGAGGAAGGGGATAGCAACCACAGAGAACCAAGCAGGACTTGGAACCAGTTTTAATGCTGCAATTCGTGTAAAATGGACCAGCAGGCAGAGGCTGGTCCTGGAGGCTCTGCTGCCATGCTGCAGGCTGAGTTCCTCCCATAGGAGCCAGGGGAGGCATGCACACGTTCATGGAAGTCTCCAGGCCTCACTCACTAATGGTCCCAACAGCTGTACAATTTCAGAAGGGAAGCAGAATCCCAGGAATCATTTTAGCATTTGGAAGGAATGTAAACTGAAGGAACGTGCCAACGCAGTAAAAGCGAGCGGGTGAAAGAGGTAACTAAAAGTGGAGATAGATTTCTAGACCTTTAGTGAGTGAAATGACCTTTGTGGACAGGAAAGAAGTGACCCCAATTATGTCAGCATCATAGTTTATTCCCCACAGCAGCCGTGGTCAAGGCTGCTGGGCACTCCTTGACAAACCTGTATCCCACGTGGCATTCTGGACTATGCAAATCACAGTTGGTCCTTCTTTTGTGCATTGTGTGGTAACAAAGGTAACTGGGCATCATTTAGTACATTTCTTCTCAGTCAAAAACTACACGTGAGTATTCCCTCCCCTCTGAGCCTGAAGTGGATGTTGACATGGAGTATGTCAGTGCCGTTTCTGGTTACATAACCTTCACTTTACACTAAATGTTTTGCATGGAGTTTGTACAAATAGTACGCAGGCAGCAGCCAAAGGGGATGTTCCTGTTGTGTTTCTGCAG
Seq C2 exon
GGTGCTGAAGTTTTGGCCTTTGTCTTTCTTGTGGAGCAAACTCTCAACCTGTGAGCAGCTGGGCCATCGCCTGCAGCACCTCCAGGTCATCAGCAGCAGCAAGAAGGCTCAAAACCAGACCCAGCTAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001985:ENSGALT00000003090:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.005 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF030879=DUF241=PU(54.1=27.0)
A:
NA
C2:
PF030879=DUF241=FE(39.6=100),PF0502410=Gpi1=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]