DreINT0114090 @ danRer10
Intron Retention
Gene
ENSDARG00000038097 | pigq
Description
phosphatidylinositol glycan anchor biosynthesis, class Q [Source:ZFIN;Acc:ZDB-GENE-030131-9793]
Coordinates
chr3:26673634-26674581:-
Coord C1 exon
chr3:26673842-26674581
Coord A exon
chr3:26673766-26673841
Coord C2 exon
chr3:26673634-26673765
Length
76 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
3' ss Seq
CATCCTTTCTTGTTTGACAGGAT
3' ss Score
10.5
Exon sequences
Seq C1 exon
GACTGTATATTTCGCTGTTGGTGGACTTTATAGCACACAGACATGGTGCTGAAGATCTTCTTCCCTCAATGCTGCAACACTGCTGACAGTGGCCTGCTGGTCGGGCGCTGGATCCCAGGACACAATTCTGCTGTGGTACTAGCTGTCGTTCACTATCCATTCATACCCGGACAGGTAAAAAAGTACTTGAGTGAGATCCAGAGCCAGACTCAAGTGGATCTTGCCGTGCTGGGTTCCTGGAGTATGCCAAAAGAAGGTCAAGAAGGATTGGACAGCTTCCTCAAAGACCTGAGCACCATCTTTCCTCAGAAATGTTGGCTGCAGTTGAGCCGTGAGATTGGCAAAAGAGGCTTTACATGTCGGGTGGTTCAAAACAATGGGATGCTTCTACAGGACAAAGAGCAGAAGAGTGATGTAGATGGCAGTGAAGAAGATAAGATCATCCTCGTTCATTATGACCAAAGGAAGGTGATGCTGTCGCAGCTTCATCCGGTGCAAGAGGCTGACCAAAAGTCTGAAATCGAGCCGTCAGAGCTGCGCTTGGTCTTCCAAACAGTTGCTCAAAGTCAGCCTCTGTTTTTCCTGGATAAATACGACGACGGGCCGCTGAAACTCACCCACTGGCAGTCTGAAGGGAGGGAGGCTAGTATTATTGCAGAGCTTCTTAAACAAGCATCTGTGCCGGTGTGCATCTGCCTCACGTGGTTGCTTTCTCTTTGGCTTTGGTTTTGCAGCTTTAG
Seq A exon
GTGAGTTCAAGTGGACCATCTTCTGTCTGTTTTCAGTATTGAAAATGTGTTAATCACATCCTTTCTTGTTTGACAG
Seq C2 exon
GATTTTAAATATACCTCCTGTGAAGTTCATTACAAGCAAGCTGTCCACGTGTGTTCAGTCGGGTTACAGGGCCGTTCATTTTAAGACCGTTTTCTCCCCTAAAAAAGCTGATACACACATGGATTTCATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000038097:ENSDART00000143710:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0502410=Gpi1=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGAAGGGAGGGAGGCTAG
R:
CTGAACACACGTGGACAGCTT
Band lengths:
172-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]