BtaINT0111564 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016594 | PIGQ
Description
phosphatidylinositol glycan anchor biosynthesis, class Q [Source:HGNC Symbol;Acc:HGNC:14135]
Coordinates
chr25:507927-508602:+
Coord C1 exon
chr25:507927-508007
Coord A exon
chr25:508008-508487
Coord C2 exon
chr25:508488-508602
Length
480 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
GAGCACTGTCTGTGCTGCAGCTC
3' ss Score
5.65
Exon sequences
Seq C1 exon
CTGTTCATCGGGACCTTGCTCTTCACCATCCTGATTTTCCTGCTTCCTACCACGGCCCTGTACTACCTGGTGTTCACCCTG
Seq A exon
GTGAGCCGAGTGCCACGTGCGCAGAGTGGTGACTGCCGGCTCTGCCTACCAGCGGGCAGCTGTGGGCAGACCACCCACCTGTGCCAGCCACAACAGAGGGTGGCTGTTCTGGACTCTGTGTACTGGGCCCTGGAGTGGACAGGGGTCCACCCTGGGGGTACCACCCCCTACTGCCCCGGCATACGCCGCTGGATGCATGGAGGGCAGGGCTCTCCGTAGTGCGGGGGGGCGGAGTGTGGCCAGCAGAGGGGCGTGGTACCCAGGTGGCCAGGCCGAGGGGCCAGTGGCGTGTGTCCCTGGGTTGGAGTGCCCCGTCTTCTGAGTGGGAGGGGGTTTCGTGACTCCTGTGCTCAGGCCTCAGGTTCAGGGCTTGGCCCCTGCACGCCCCGGGGACCTGTCAGGCCGCTCAGCTCAGGCATGTGCAGCATGGCTCTGGCCACGGTCCCAGGCCCAAGACCCTGAGCACTGTCTGTGCTGCAG
Seq C2 exon
CTCCGGCTCCTAGTGGTCACCGTGCAGGGCCTGGTCCATCTGCTCGTGGACCTCATCAACTCGCTGCCGCTGTACTCGCTTGGCCTCCGGCTGTGCCGGCCCTACAGGCTTGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016594:ENSBTAT00000022073:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.109 A=NA C2=0.321
Domain overlap (PFAM):
C1:
PF0502410=Gpi1=PD(10.8=63.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCGGGACCTTGCTCTTCAC
R:
CCTGTAGGGCCGGCACAG
Band lengths:
184-664
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]