GgaINT0015105 @ galGal3
Intron Retention
Gene
ENSGALG00000001985 | PIGQ
Description
NA
Coordinates
chr14:14280475-14281636:+
Coord C1 exon
chr14:14280475-14280555
Coord A exon
chr14:14280556-14281521
Coord C2 exon
chr14:14281522-14281636
Length
966 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
3' ss Seq
ACTGAACTGTTTCTCGTTAGCTC
3' ss Score
5.01
Exon sequences
Seq C1 exon
TTATTTATTGGCACGCTGCTATTTACCATCCTGCTGTTCCTTCTGCCTACAACTGCACTGTACTACTTGGTGTTTACCCTG
Seq A exon
GTAAGATTTAACCCTTGAACATAGCTGTCTTCTAACATGTATGAGAGATATGTAAGGGTGTCTTGGTCATTTACTGTCATCCACAAAGAAAACACGAGGTTTGTGTGAGCATCCAGGAAGGTTTGTCACACAGCCCATGCAGACCAAGTAAGTGGAATTCAGGATACGTGTCTATGTTTCTCCAAAGGGGATTCCCAGCAAATCCAGGTCAGCAGGACATGCTGTTCCCTTGTCTCCCCCTCAGAAGCCATTTCAGTCTTTCCATCCCACGTCTGGGGTGATGACCTCTCCGGTTTGATCCAGAACAACTTCTTCAGGAAGTTAACCTGCTGTGTTAAATGCTCTCCGCCAGGCTTTGCTAAGAGGGTTGGACTTCCTTCTTTTTCTTTTCTTCCTCCGGTATGACCAGTCCTGGCCATGGCCTGCCTGGAGCAACATTTTCCACAGACAGCGGCCTTCACATGATTTCAATGTCTTTTATGAGCCCTCTCTTCTGAGATGAGCTTGACAGCAAAAATAAATGGAGTCTGACAAAAGGAGCTTTAGTCAGCACAATGCTAAGCAGGAAGCTCGTTTCTGACTGCATAGCTCTTGCTTAAATGCTCTACGTGGGGTTTCTTCAGTCAGAAATAAAGCACTTTAGCTCGCTGCTGGGAAGGGAAATTTGCATTCTCTGATGCAGAGTGATGGAGAGCACTGGAACTGTAAGCATGAAATCTCCCTTTCTGACTGTGCCTGTTGAAAGGGGAATTGCTTTTGTGTCCTTATGGCTCGCAGCATCTACCATCGTGAGGCTTCACTACAATTAGACCCTTAAGCAACCTCATACAGGCACTGGGTACCCAGCACTTTTAGACATCAGCCCCAGCTTGGAAGTTTAGCTTATGCACAATGTCAGAGTGCAGATCTACTCATGAATTTGCAGGGGTTGCACCTCCTGTCGCTCACTGAACTGTTTCTCGTTAG
Seq C2 exon
CTCCGTTTGCTGGTGGTGATTGTGCAAGGCCTGATCCACTTGCTGGTTGACCTGATTGACTCTCTGCCCCTTTATTCAATCATCCTTCGGTTCTGCAGATCCTACAGGCTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001985:ENSGALT00000003090:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0502410=Gpi1=PD(8.9=63.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGGCACGCTGCTATTTACCA
R:
CTGCCAGCCTGTAGGATCTGC
Band lengths:
190-1156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]