MmuINT0119580 @ mm10
Intron Retention
Gene
ENSMUSG00000025728 | Pigq
Description
phosphatidylinositol glycan anchor biosynthesis, class Q [Source:MGI Symbol;Acc:MGI:1333114]
Coordinates
chr17:25930521-25931038:-
Coord C1 exon
chr17:25930958-25931038
Coord A exon
chr17:25930636-25930957
Coord C2 exon
chr17:25930521-25930635
Length
322 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
GAATGTCACCTTTGCTACAGCTC
3' ss Score
5.44
Exon sequences
Seq C1 exon
CTCTTCATTGGGACCTTGCTCTTCACCATCCTGGTCTTCTTGCTACCCACCACCGCTCTGTACTACCTGGTATTCACCCTG
Seq A exon
GTGAGCCCAGTACCTCCTGCCCTGGGGCCTACAGAACAACTTGGGATTGGTCACTGCCTGAGCCAGGCACACAGGAAACAGGCTATCTACCTCTTGGGTTCACATCAGCATGGCTGTTCTGAACTCTCTGGAAACTATGTACTGGTCTTAAAGCAGTTGGGGGTTCCGTCCTGGAGAAGACTGGCTACAGGGGAGGTTGGGACCCATAGTAAGTGGATGGGGTCATAGAGGAGCCCTCCTCTAGAGGTGAGCCTATTGGGCTGCTCTCCTCCTAGGCCCGTTTAATGTGTGCCCTCAGCCCTGAATGTCACCTTTGCTACAG
Seq C2 exon
CTCCGGCTCCTGGTGATCACTGTGCAAGGCTTAATCCATCTACTTGTAGACCTCATCAATTCCCTGCCACTATACTCCCTTGGCCTTCGACTCTGCCGACCCTACAGGCTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025728:ENSMUST00000026823:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.002
Domain overlap (PFAM):
C1:
PF0502410=Gpi1=PD(10.8=63.0)
A:
NA
C2:
PF0502410=Gpi1=PD(36.7=46.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGGGACCTTGCTCTTCACC
R:
CTGCCAGCCTGTAGGGTCG
Band lengths:
190-512
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types