HsaINT0124824 @ hg38
Intron Retention
Gene
ENSG00000007541 | PIGQ
Description
phosphatidylinositol glycan anchor biosynthesis class Q [Source:HGNC Symbol;Acc:HGNC:14135]
Coordinates
chr16:580183-580972:+
Coord C1 exon
chr16:580183-580263
Coord A exon
chr16:580264-580857
Coord C2 exon
chr16:580858-580972
Length
594 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
TAAATGCTCCTCTGCCACAGCTC
3' ss Score
6.43
Exon sequences
Seq C1 exon
CTGTTCATCGGGACTCTGCTCTTCACCATCCTGCTCTTCCTCCTGCCTACCACAGCCCTGTACTACCTGGTGTTCACCCTG
Seq A exon
GTGAGCTGAGCACCCACAGGCTGGGCCTGGCTGCAGTGCTCTGTGTGGCTTCTGCCAGCGCTGCCTGGGAGCAGTCAGCTGTGGGGCGGGCTGTCTCCTGCTGCAGGCCACGTGGGTGGCCTTTCAGGACCCTCTGGGCAGTGAGTGCTGCGCTCTGGAGTGGGCGAGGCCCTATCCTGGCCAGTAAGACACCCTCACTGCCCTGGAGCACGCAGCTGGGTGCGTGGTGGAAGGACCCCACGGCAGGTGGGGTCACGCAAGAGGCCTCCCCTGGTGCCTGGCACTGGGGCAGACAGTGGGAGGTGAGCAGAACCACCTCCAGCACCTGCTTGATTCCCAGGCCTCGATCCCCTCTGCATGTGAGGCTGTGGGGAGGCACCTCTGACCTGGTGAGAGGGCCGGGTGCTCCGCCTCCAGCTTTGCTCCAGAGCAAGGCCCAATGGCAGACTCCGTGCCCTGCTCAGGGTGGGGTCCCTGCTCTCCCCAGGACCCTGCAGCCTCTGGGCCCCCTTCATCGTGGCCCAGGATGGGGTCGGACTGCTCTGCCCCCAGGCGCGTCTGGCCGGGCCGGTCCTAAATGCTCCTCTGCCACAG
Seq C2 exon
CTCCGGCTCCTGGTGGTCGCCGTGCAGGGCCTGATCCATCTGCTCGTGGACCTCATCAACTCCCTGCCGCTGTACTCACTGGGTCTTCGGCTCTGCCGGCCCTACAGGCTGGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007541:ENST00000321878:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0502410=Gpi1=PD(12.8=64.3)
A:
NA
C2:
PF0502410=Gpi1=PD(35.4=43.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCATCGGGACTCTGCTCT
R:
CCTGTAGGGCCGGCAGAG
Band lengths:
188-782
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development