BtaINT0111568 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016594 | PIGQ
Description
phosphatidylinositol glycan anchor biosynthesis, class Q [Source:HGNC Symbol;Acc:HGNC:14135]
Coordinates
chr25:505156-505887:+
Coord C1 exon
chr25:505156-505276
Coord A exon
chr25:505277-505838
Coord C2 exon
chr25:505839-505887
Length
562 bp
Sequences
Splice sites
5' ss Seq
GACGTGAGT
5' ss Score
9.22
3' ss Seq
GAGCTTGTCTTTTTGCCCAGGGC
3' ss Score
6.09
Exon sequences
Seq C1 exon
GAAGGCCAACACGCTGGTCTCTGTGCTGCTCGACATGGCCCTGGGCCTCCTGCTGCTGTCCTGGCTGCACAGGAAGGACCGCTTTGCTCATCTGGCCGAGGCGCTCGTCCCTGTGGCTGAC
Seq A exon
GTGAGTTGGCGGGAGGGCCCCGGCTGCTCTCCAGCACCTGCTTCCTGGGGGTGGGGCGAGCCCTTCCTGGGAGCAGCTCGCAGCGGGCCTGCCCGGTCCCCTCACAGCCACTGTGTCCTGCGGGACCCGTGGAGCTGCATAGATGTGGGCCCTGTAGCTGGGCCACCTTGCTGCTGCTGGCCTTGGCCTTCCCGTCCTGACGGTGGCCATCTGGAGCCCCTGTGCAGGCTTTGCAGGGGCACCACCTGCCTGCCAGGCCCAGGTCCCAGCGCCCCGTGGCCCCGCTGTGCACAGTCGTTTCTGCTCTCCTGGCCATCAGCCCAGGCCTGTGCACGGTCAGCGGGTCAGCGTCACGGAGACCCCGTGCCTCCAGGCTGCTCTCTGTGGTGCACTCAGCCTCCCGTCTGCCACCCTCCCGCCGGTTCTGTGGCTCCCGCACTGAGGGCCAGAAGCCCCGGCTTCCTCTCCCAGCCATGGCCGCCTGCCTGCTGTCCGTCCACACAGGCTCTGAGTTCTCTCTGCCGTCTCAGCACTTGTATCGGGAGCTTGTCTTTTTGCCCAG
Seq C2 exon
GGCAGCCCTCAGCACCCCTCCCAGGCCTCTGGGGCCCTCTCGGCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016594:ENSBTAT00000022073:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.176
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]