MmuINT0119576 @ mm9
Intron Retention
Gene
ENSMUSG00000025728 | Pigq
Description
phosphatidylinositol glycan anchor biosynthesis, class Q [Source:MGI Symbol;Acc:MGI:1333114]
Coordinates
chr17:26069050-26071823:-
Coord C1 exon
chr17:26071703-26071823
Coord A exon
chr17:26069177-26071702
Coord C2 exon
chr17:26069050-26069176
Length
2526 bp
Sequences
Splice sites
5' ss Seq
GATGTGAGT
5' ss Score
7.77
3' ss Seq
CCTGCTCCCTGTCCCTGCAGCGC
3' ss Score
12.86
Exon sequences
Seq C1 exon
GAAGGCCAACATGCTGGTTTCTGTGCTACTGGATGTGGCCCTTGGCTTGCTGCTGCTCTCTTGGCTCCACAGCAATAACCGAATTGGACAGCTGGCCAATGCCCTGGTCCCTGTGGCTGAT
Seq A exon
GTGAGTGGATTGGGTGGAGCCCAGCTTCCTGAGGGTTGGGAATCCTCTTGGGCAGTCCTTCAGCTGGCAGGAACAGCTCTTCCCTGTCCTCACCCTAGAGACCCAGCCTTTGGCCCCAGCCTGAGATATTTCTTAGCTCTTGGGACCTATGTCTCTCAGGGCAGCATTGGTGAATTGCCTGCTGCCCCTTCCTGAAGGTGGCAGTGTCTGAGGGCCACTTTGGTTGAGGCTTTCATGGGCCCCCTTTCCATGCTAAGCTTATATACCAGATGAAAGCCAACCTTAGCACAACTCTGGCTCGGGGCTGTTGCTGGGCTGTCCACACTATTGCCAGATTGCTCTTACACTGGAGACAAGAGGCACAGGCTGTCCTCTCTACTCCCCATGCTCTCGTACACGGTATGTACAGCACATTCATGCTGGTTCCTTCACCTCATTTCTACCTGGCCATGGAACGTCTCGGTTCTCCATCTCATCTCAGTAGAGTCAAAGCAGTGTCTCCGTGGAAGTCTTGTGGGCTCTCTTCTGCTCCGTCAGTGCGGATGCCTGCTGGGTCTGTTTGTTGCCAGGCCAGGAATCTGGGGCAGCAGTGGGCTCCTCTCAGCTTTGTGAGATCTGTGGAGGTCATCCCAGTAGGAAAGAGGAGCTGGAGCTGGGTGAACGGGTGAGGCTGTTTCTATATTCTGTTTCTTGGCCAGCTTTGTCTGGGGAAAAAAAAAAGCACCCATAAATATTTAATTAAAAAATGGAGTCTTTTTCTGCTGCCAGGCTTTTATCCTTTAAATATTAAATAAGACCTATTTATAAAGAAGGTTTTGCTCTCCTCCCTGGTGGTCCTGAGGCTCTTGCACAGGATTGCAAGAGGCTTTGAGAAGAGCATGTAGGGATATAAGAGTTACTCTTGAGGACTAGACAGTGGTGGTGCAGACCTTTAATCCCAGCACTTGGAAGGCAGAAACAGGCAGATCTCTATGAGTTTGAGGCCAGCCTGGTCTATACAGTGAATTCCAGGACAGCCAGGGCTATATAAAGAAACTGTCTCAAAAACATACATACATACAGACAGACAGACAGACAGGATTACTGCTATGGCCTCACCTTGGTGACAGAGTAGAGCGTCCCTTAGCCAGACATCCCGTCCCTTACCCTGCTCGTCGCTGACGTCCCCATGGGTTCACTGCACTCAGTTTCGTCTTTTCTTTGGGCCCCTGCCCTCCGGCACTCTCCCCTGCTTGCCAAGTCTCTGATAAGCCCAACACCTTCTCACTCACCCAAGATTGCTACCCATTGCTGGGTAGCCCTAACCTCTGGTAGCAAGTGGTACAGTGAAGTCTTTAATGGGGGCCTTCAGTATTTCCCAAGTATGGTTTGAATTGAGCCATGGTCTGTCCCACCTCAGCAATATCCAGGTTTCATAGACTTAGGACCCTATGGGTCCAGGGCTAATGTAGCAGTATAAGAGGATGACGGGAGTTCTCAGGTTGAGGTAGATGTCTCATGGGGACACACGCTCGCTCAAGGAATTGGTTTATGTATTCCAGCCTGTTAGAAGATTCCTCAAACCAGGATCTTGGAAGTCATCTGTGGTCAGGGGTCAGGGGTCCAGTGGCCAGACAAATTTGGGAAACAGTTTCTGTCCAAAGTTAGAAGACTTTGGTGCACACCTTTAACTTAATCCTGGCACTTTAGAGGCAAAGGCAGGTGGATCTCTATGAGTTTGAGGCATCCGAGTCTACACAGCGAGTTCTAAGATAGCCAGAACTATATAGGGAGACCCTGTTTAAATAAATAGACAATGATTTTGAACCTTGGAAGGAAGTGCAGGCTGCCTCTGTTCTGCCCAGAGAGACTGGCTAGGGTGGGAGTCCACTCTAGACAATCCTCAACCTGCCCACTCATCTGCCTCTGTGACCGTGTCATTCCCCCCCTGCTCCATGTCCCTGCTGCCCACTCATCTGCCTCTGTGACCGTGTCATCCCCCCCTACTCCATGTCCCTGCTGCCCACTCATCTGCCTCTGTGACCGTGTCATCGCCCCCTGCTCCATGTCCCTGCTGCCCACTCATCTACCTCTGTGACTGTGTCATCCCCCCTGCTCTATGTCCCTGCTGCCCACTCATCTGCCTCTGTGACCGTGTCATCCCCCCCTGCTCCATGTCCCTGCTGCCCACTCATCTGCCTCTGTGACCGTGTCATCCCCCCCTGCTCCATGTCCCTGCTGCCCACTCATCTGCCTCTGTGACCGTGTCATCCCCCCTGCTCCATGTCCCTGCTGCCCACTCATCTGCCTCTGTGACCGTGTCATCCCCCCTGCTCTATGTCCCTGCTGCCCACTCATCTGCCTCTGTGACCGTGTCATCCCCCCTGCTCTATGTCCCTGCTTCCCACTCTTCTACCTCTGTGACCGTGTCATCCCCCCTGCTCCATGTCCCTGCTGCCCACTCATCTGCCTCTGTGACCATGTCATCCCTGCCTACTCATCTGCCTCTGTGACCGTGTCATCCCCCCCTGCTCCCTGTCCCTGCAG
Seq C2 exon
CGCGTGGCTGAGGAGCTCCAGCATCTGCTGCAGTGGCTGATGGGTGCTCCTGCTGGGCTCAAGATGAATCGGGCACTGGATCAGGTGCTAGGCCGCTTTTTCCTGTACCACATCCATCTGTGGATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025728-Pigq:NM_011822:4
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0502410=Gpi1=PU(21.1=97.6)
A:
NA
C2:
PF0502410=Gpi1=FE(22.1=100)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: