HsaINT0124820 @ hg19
Intron Retention
Gene
ENSG00000007541 | PIGQ
Description
phosphatidylinositol glycan anchor biosynthesis, class Q [Source:HGNC Symbol;Acc:14135]
Coordinates
chr16:626134-628505:+
Coord C1 exon
chr16:626134-626254
Coord A exon
chr16:626255-628378
Coord C2 exon
chr16:628379-628505
Length
2124 bp
Sequences
Splice sites
5' ss Seq
GACGTGAGT
5' ss Score
9.22
3' ss Seq
TGGCCCCTGTGTCCCTGCAGCAC
3' ss Score
10.86
Exon sequences
Seq C1 exon
GAAGGCCAACACGGTGGCCTCTGTGCTGCTGGACGTGGCCCTGGGCCTCATGCTGCTGTCCTGGCTCCACGGGAGAAGCCGCATCGGGCATCTGGCCGACGCCCTCGTTCCTGTGGCTGAC
Seq A exon
GTGAGTGGACTGGGGTGGAGCCCGGTGTCCCGGGTGGGCGTGGGGACCCCTCCTGGGCAGCAGAGCCTTCCCGGGCCAGAGCCACCGCCCCACAAAGCCAGTTCTACCTTCTCCATGCTCTGGAGACACGGCCCTCCCCTGAACCAGAAGCAGGAACTCCAGGGGCGCTGGGGCCTGGGCAGGGCAGGCCTCGCAGGTACACCCCCCTTTCCTTCTGAAGGGGCTGTGTGCAGGAGCCAGCCGGGCTGAGGCTCTGGGGAGCCCGCCTCTCCCTGTGGGCCCAGCGTCCTGGTATCTCCCTTGTGGTCCCTGAGATCAGCGTTGCCCTCCTGGCTCTCTGGGGCCCTCTGCAGAGCCAGGGTCATGAAACCTTTCCTGTCCAGGGAGGCCCATGTGCAGCCCAGCTGGGACTTCCTGCCCTGCCCCTGTGCTGATTCTGTAACTCCTGTGCTGAGAGCCAGAGGCACAGCTTGTCTCCCATCTCCCACCTTCCCTGCATGGTCTGTGCCCCGTTTCCAGCCGGGTGCAGCCCCCTCCTCTGCAGATCTAGTGCATTTCCATGCTGCCTCTGGGCCTTCAGCTTCTCTGTCTTCCTCCCTCAGCACCAAAGCCCCGTCTCTTCCATTAGGAGCTTGTCTTCCTGCTGGGGGTGGTACCTGACTCTTTGGCCCACCCTCGGGCCTCTGTGGAGGCCTCCTTGAGGCCTGACTGGGTGGGTCTTGTGTGGGCTGCAGGTGTGCACTGGGCCTGCTTGTGGCCAGGCCAGGCCTCTGGGGGCAGCATCAGGCACGTCTGTGTGGCTGTGGGGGTGCAGGGAGCTCCAGCCCAGAAGGAAGGAGGGGCGGGGCTGGGGAAGGGGCTCGGCAGCTTTGCCTGTGGTCGTCCGCACCTGCCACCGGCCTACTTTGTCCTAGACCTCCCTTTTGCAAAAGTGCTCAGAAATATAAATATTTAATTTAAAAATGAAAGTCTCTTCCTGCTGCCAAGCTCTTATCCTTTAAATATTAAATAAGCTCTATTTATAAAGAATGTTCTTTTCTCAGCCGGGGGTGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACAGTGAAATCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGTATGGTGGTGGGCACCTGTAGTCCCAGCTAATTGGGAGGCTGAGGCAAGAGAATGGCGTGAACCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATCTCACCACTGCACTCCAGCCTGGGCGACAAAACAAGACTCCGTCTCAGAAAAAAAAAAAAAAAAAAGTGTTCTTTTCTCCTTCTTGCCAGTCCTGCTGTGGCTGAGGCCTTGGCCCAGGCTTGGAAGGGGCCTGCGCAATGGGCAAGTGGGGGCCAAGGTGTCACTCACTGTCTCCTTAGTGGGGAGGCTGAGGCTCCCTTGGGGTCTGCCCGCTGGGGCACAGCCTCTGGATGCTGAGTTTCTTCCTGGGCGGCCAAGACCCTGCTTCCCTGTTTGCTCTTGGGGGTGCCTGTGCCCTCAACTTGACGCCATCCTCCCTCTGGGGACCTGTCCTCCTGCCTGGTCGCTGTGGCCCTGATGGGCTTGGCACTGTCTCGCTCACCTGTGGTCATCCCGGGCAGCCCCCAGCCTCTGCGATGGGGTGGGGCCTCTGGAGGGGACTGTGTCAGCTGTGGGCTTCCCTGCAGGGCTGGAGCCGAATCAGGGTCTGCCAGGCCTCAGTGCGTCCACGTGTTTGGGGCCGAGGGCTCCAGTGGGTCCTGTGGCCGAGGTAGTGAGAGGGGAGGAAGATGGTAGAGGTGGGTGCAGGCAGGGGGCCACGCGGATGCCCTGTGGGCCCGGCCATGTCACCCAGGCCTGCAGAGAGAGGCCTCCAGACCAGCCTCCTCAGACCCCAATCCCGGAGCCATCTGTGAAGGGGAGCCCGTGTGCTGTCCACGCTAGGACGCGGTAGACCCTGGAGGAGGGAAGGCTGGCCAAGGTGGGAGCCCATCACGAAAGAGCCTGGGGAGATGCAGGTGCTGAGCCTGGCTGCCCCCGCCCCAGCGTGGCCCCTGTGTCCCTGCAG
Seq C2 exon
CACGTGGCCGAGGAGCTCCAGCATCTGCTGCAGTGGCTGATGGGTGCTCCCGCCGGGCTCAAGATGAACCGTGCACTGGACCAGGTGCTGGGCCGCTTCTTCCTCTACCACATCCACCTGTGGATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007541-PIGQ:NM_148920:4
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0502410=Gpi1=PU(21.1=97.6)
A:
NA
C2:
PF0502410=Gpi1=FE(22.1=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)