RnoINT0111135 @ rn6
Intron Retention
Gene
ENSRNOG00000020140 | Pigq
Description
phosphatidylinositol glycan anchor biosynthesis, class Q [Source:RGD Symbol;Acc:1359535]
Coordinates
chr10:15294734-15296939:-
Coord C1 exon
chr10:15296819-15296939
Coord A exon
chr10:15294861-15296818
Coord C2 exon
chr10:15294734-15294860
Length
1958 bp
Sequences
Splice sites
5' ss Seq
GATGTGAGT
5' ss Score
7.77
3' ss Seq
CCTGCCCCATGTCCCTGTAGCGC
3' ss Score
10.14
Exon sequences
Seq C1 exon
GAAGGCCAACATGCTGGTTTCTGTGCTCCTGGATGTGGCCCTTGGCTTGCTGCTGCTCTCTTGGCTCCACAGCAACAACCGGATTGGACAGCTGGCCAATGCCCTGGTCCCTGTGGCCGAT
Seq A exon
GTGAGTGGATTCGGGTGGAGCCCAGCTTCATGAGGGTTGGGAATCCTCTCGGGTAGTCCTTTAGCTGGCAGGAACAGCTCCTCCCTGTCCTCACCTAGAGACCCTGCCTTTGCCCCTAGCCTGAGATGTTTCCTGGCTCTTGGGACAGGCTCTTGTTTCTTGGTCTCTCAGGTCAGCATTGGCGAAATGCCTGCTGCCCCTTCTTGAAGGTGGCAGTGTCTGGGGGCCATTTTGATTGAGGCTTTCATGGACTCCTTCGTGCTAAGCTTATCTTCCAGATGAAAGCCAACCTCAGGACAGCTCTGGCTCAGGGCTGTTGCTGGGCTGGCCATGCTATTGCCAGATTGCTCTTACACTGGAAACAAGAGACATAGTCTTGTCCTCTCTACTCCCGGTGTTTCCCTACACGGTATGTACAGCACATCCACACTGGTCCCTTCACCTCATTTCTACCCAGCCTTGGAACACTTCAGTTCTCCATCTCATCTGCAGTAGACTCAAAGCAGTTTGTACTGTGGAAGCCTTGAGGGTTCTGCTTCTGCTCCATCAGTGCAGATGCGGGCTAGGTCTGCTCGTTGCCAGGCCAGGAATCTGGGGCAGCAGTGGGCCCTCAGCTTTAAGATCTGTGGAGGTCATCCCAGTAGGAAAGAGGAGCTGGGGCTGGGTAAAAGGGTGAGGCTGTTTCTATATTCTGTTTCTTGGCCAGCTTTGTCTGAATTTTCCTTTTTACAAAATTGCAAAAAAAAACAAACCATAAATATTTAATTAAAAGATGGAGTCTTTTCCGCTGCCAGGCTTTTATCCTTTAAATATTAAATAAGACCTATTTATAAAGAGGGTTCTGCTCTCCTCCCTGGTGGTCCCGAGGCTCTTGCACAGGGTTGCAGAGGCTTGGGGAAGAGCATGGATGGATGTAAGAGTTACTCTTGAGGACTGGACAGTGGGCCACACCTTTAATCCCAGCACTTGGGAGGCAGAGACAGGCAGATCTCTATGAGTTTGAGCCCAGCCTGGTCGCTACAGTAAATTCCAGGACAGAAACTGTCTCAGAGAGAGGGAGAGGGAGAGAGAAAGAGAGAGAGAAATAAAAACGGACAAGGATTACTCCTGGGGCCTCACCTTGGTGATAGAGTGGAGCATCCTTAGCCAGGACCAGCTTCCCTCTTGTTGAAGTCCCTGTGCTGTTCACTGCACTCAATTGTGTCTTTTCTCTACGGGCCCTTGTTCTCTGGGGCTCTGACCTGCTTGCCAAGTCTCTGATAAGCCTGACACCCTCTCACTCACCCAAGATTGCTATCAATTGCTGGGTAGCCCTACCTCTGATAGCGAGTGGATGGTGAAGTCTTTAACAGAGGCCTTCAGTATTTCCCAGGTGTGGTTTGAATTGAGCCATGGTCTATCCCATCCCACATCAGCAATATCCAGGTATCATGGGCCTAGGACCCTATGGGTCTGGGACTGAAGTAGCAGAATAAGAGGATGAAGGGAGTTCTCAGGCTGAGGTAGATGTCTCATGGGGACACATACACAAGGCATTGGTTTATGTATTCCAGCCTGTTAGATTCCTCAAACCAGGATCTTGGAAGTCATCTGTGACCAGGGGTCAGGGGTCCAGTGGCCAGACAAATTTGGGAAACACTGTTTTTGTCCAAAGTTAGAAGACTTTGGTGCACATCTTTAATCCTGGCACTTGAAAGGCAGAGGCAGGTGGATCTCTATGAGTTTGAGGCCACCCTAGTCTACACAGTGAGTTCCAAGACAGTTAGAACTATATAGTGAGACCCTGTTTAATTAAATAAAAAGACAATGAGTCAGAACCTTGGAAGGAAGTCTAGGCTGCCTTTGTCCTGCCCAGATAGCCTGGCTAGAGTGGGAGCCTGTTACAGACAATCCTCACCTACTCACTCACCTACCTCAGTGTGACCATGTCATCCCTCCCCTGCCCCATGTCCCTGTAG
Seq C2 exon
CGCGTGGCTGAGGAGCTCCAGCATCTGCTGCAGTGGCTGATGGGTGCTCCTGCTGGGCTCAAGATGAATCGGGCACTGGATCAGGTGCTAGGCCGCTTTTTCCTGTACCACATCCACCTGTGGATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020140:ENSRNOT00000027353:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0502410=Gpi1=PU(21.1=97.6)
A:
NA
C2:
PF0502410=Gpi1=FE(22.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGCCAACATGCTGGTTTCT
R:
ACAGGTGGATGTGGTACAGGA
Band lengths:
241-2199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]