HsaINT0124820 @ hg38
Intron Retention
Gene
ENSG00000007541 | PIGQ
Description
phosphatidylinositol glycan anchor biosynthesis class Q [Source:HGNC Symbol;Acc:HGNC:14135]
Coordinates
chr16:576134-578505:+
Coord C1 exon
chr16:576134-576254
Coord A exon
chr16:576255-578378
Coord C2 exon
chr16:578379-578505
Length
2124 bp
Sequences
Splice sites
5' ss Seq
GACGTGAGT
5' ss Score
9.22
3' ss Seq
TGGCCCCTGTGTCCCTGCAGCAC
3' ss Score
10.86
Exon sequences
Seq C1 exon
GAAGGCCAACACGGTGGCCTCTGTGCTGCTGGACGTGGCCCTGGGCCTCATGCTGCTGTCCTGGCTCCACGGGAGAAGCCGCATCGGGCATCTGGCCGACGCCCTCGTTCCTGTGGCTGAC
Seq A exon
GTGAGTGGACTGGGGTGGAGCCCGGTGTCCCGGGTGGGCGTGGGGACCCCTCCTGGGCAGCAGAGCCTTCCCGGGCCAGAGCCACCGCCCCACAAAGCCAGTTCTACCTTCTCCATGCTCTGGAGACACGGCCCTCCCCTGAACCAGAAGCAGGAACTCCAGGGGCGCTGGGGCCTGGGCAGGGCAGGCCTCGCAGGTACACCCCCCTTTCCTTCTGAAGGGGCTGTGTGCAGGAGCCAGCCGGGCTGAGGCTCTGGGGAGCCCGCCTCTCCCTGTGGGCCCAGCGTCCTGGTATCTCCCTTGTGGTCCCTGAGATCAGCGTTGCCCTCCTGGCTCTCTGGGGCCCTCTGCAGAGCCAGGGTCATGAAACCTTTCCTGTCCAGGGAGGCCCATGTGCAGCCCAGCTGGGACTTCCTGCCCTGCCCCTGTGCTGATTCTGTAACTCCTGTGCTGAGAGCCAGAGGCACAGCTTGTCTCCCATCTCCCACCTTCCCTGCATGGTCTGTGCCCCGTTTCCAGCCGGGTGCAGCCCCCTCCTCTGCAGATCTAGTGCATTTCCATGCTGCCTCTGGGCCTTCAGCTTCTCTGTCTTCCTCCCTCAGCACCAAAGCCCCGTCTCTTCCATTAGGAGCTTGTCTTCCTGCTGGGGGTGGTACCTGACTCTTTGGCCCACCCTCGGGCCTCTGTGGAGGCCTCCTTGAGGCCTGACTGGGTGGGTCTTGTGTGGGCTGCAGGTGTGCACTGGGCCTGCTTGTGGCCAGGCCAGGCCTCTGGGGGCAGCATCAGGCACGTCTGTGTGGCTGTGGGGGTGCAGGGAGCTCCAGCCCAGAAGGAAGGAGGGGCGGGGCTGGGGAAGGGGCTCGGCAGCTTTGCCTGTGGTCGTCCGCACCTGCCACCGGCCTACTTTGTCCTAGACCTCCCTTTTGCAAAAGTGCTCAGAAATATAAATATTTAATTTAAAAATGAAAGTCTCTTCCTGCTGCCAAGCTCTTATCCTTTAAATATTAAATAAGCTCTATTTATAAAGAATGTTCTTTTCTCAGCCGGGGGTGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACAGTGAAATCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGTATGGTGGTGGGCACCTGTAGTCCCAGCTAATTGGGAGGCTGAGGCAAGAGAATGGCGTGAACCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATCTCACCACTGCACTCCAGCCTGGGCGACAAAACAAGACTCCGTCTCAGAAAAAAAAAAAAAAAAAAGTGTTCTTTTCTCCTTCTTGCCAGTCCTGCTGTGGCTGAGGCCTTGGCCCAGGCTTGGAAGGGGCCTGCGCAATGGGCAAGTGGGGGCCAAGGTGTCACTCACTGTCTCCTTAGTGGGGAGGCTGAGGCTCCCTTGGGGTCTGCCCGCTGGGGCACAGCCTCTGGATGCTGAGTTTCTTCCTGGGCGGCCAAGACCCTGCTTCCCTGTTTGCTCTTGGGGGTGCCTGTGCCCTCAACTTGACGCCATCCTCCCTCTGGGGACCTGTCCTCCTGCCTGGTCGCTGTGGCCCTGATGGGCTTGGCACTGTCTCGCTCACCTGTGGTCATCCCGGGCAGCCCCCAGCCTCTGCGATGGGGTGGGGCCTCTGGAGGGGACTGTGTCAGCTGTGGGCTTCCCTGCAGGGCTGGAGCCGAATCAGGGTCTGCCAGGCCTCAGTGCGTCCACGTGTTTGGGGCCGAGGGCTCCAGTGGGTCCTGTGGCCGAGGTAGTGAGAGGGGAGGAAGATGGTAGAGGTGGGTGCAGGCAGGGGGCCACGCGGATGCCCTGTGGGCCCGGCCATGTCACCCAGGCCTGCAGAGAGAGGCCTCCAGACCAGCCTCCTCAGACCCCAATCCCGGAGCCATCTGTGAAGGGGAGCCCGTGTGCTGTCCACGCTAGGACGCGGTAGACCCTGGAGGAGGGAAGGCTGGCCAAGGTGGGAGCCCATCACGAAAGAGCCTGGGGAGATGCAGGTGCTGAGCCTGGCTGCCCCCGCCCCAGCGTGGCCCCTGTGTCCCTGCAG
Seq C2 exon
CACGTGGCCGAGGAGCTCCAGCATCTGCTGCAGTGGCTGATGGGTGCTCCCGCCGGGCTCAAGATGAACCGTGCACTGGACCAGGTGCTGGGCCGCTTCTTCCTCTACCACATCCACCTGTGGATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007541:ENST00000321878:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0502410=Gpi1=PU(21.1=97.6)
A:
NA
C2:
PF0502410=Gpi1=FE(22.1=100)
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development