BtaINT0111687 @ bosTau6
Intron Retention
Gene
ENSBTAG00000024633 | PIK3C2B
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:HGNC Symbol;Acc:HGNC:8972]
Coordinates
chr16:1991017-1992218:-
Coord C1 exon
chr16:1992109-1992218
Coord A exon
chr16:1991219-1992108
Coord C2 exon
chr16:1991017-1991218
Length
890 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TTCTTCCCATCCTTCTGCAGGTT
3' ss Score
12.41
Exon sequences
Seq C1 exon
ATGTTGTCCTGTGGGATCCCTGAACTCTCAGACCTGGAAGACCTCAAGTACGTGTACGATGCCCTGAGGCCTCAGGACACGGAGGCCAACGCCACTACCTACTTCACCAG
Seq A exon
GTGAGACGCTGCATACGAAACAGTGCTGCCCGTTCTGGGTAGGTAATTTCCAGGCCGCTCGATGGGGAGGAGCTGGGCTAGGGAGACGGGAGAGGCTTTGCTCTGGTGGCAGAGCTTAGAGTTGACAGTACGGGTCAGTTGTCTGGTCAGTTACTTCTCTCAGGCTCAGTCTCCCACCTGTACTTGGGTGCCAACCTTTACGCGGAGGTATTGCGATCCCCCGCTTGCGTTCTCACCAGGTCGCGGGCAAGGACGTTGTCTGTGGGGCCGTGTACAGTAGGGGTTTTGTAATAGTTTTTAGCTCTCTCGATCAGGACCCTCCCCCTTGTCAGAACATGGAATTTCATGGTTCCATTTTCCCATGTTGGATGTTTTTAGACACATTATGCACGAAAGCAGGAAAGTGCCTATGTACTAATGAATGTCTACGGTTTTGTCCATTTTATTATGTACCCTTTTGGGAAGTTAGCGAGTTAAATTTTCTCTGGGGCTAATACAGTACCTTTCCTTCGGAACTAAAGTCTCTGTGTTGGGTTTTGTTTGGTGGGGATCCGCTGTACTGAAGCTGAAACTCAGTTTGACAACAGTATTTAGACTTCCACGTGGTGACCCCACGGTGGCGTCCCACAGTTCCTTCCTACTGTGGATTAACCGTCTTTGGCCCAGGTGTGCAGTGAGGGGAGATGAGACCCCCAAGATCCACAGGAGTAAACTGTATTCAGATCATTGTGTGCAGTCATGTCCTTATAAGGCTAGCACACAGGGGAAATGATCTGATCTGAGCTGCGTGTTAGCCTCAGGTGTTGGGTGATATTCCTTGAGTACAGCTCTGCCCAGGCAGTGGCGACTTGGGTCTGTGGTTGCAACCTTTTCTTCCCATCCTTCTGCAG
Seq C2 exon
GTTGATCGAGTCCAGCCTTGGCAGTGTAGCCACAAAGCTCAATTTTTTTATTCATAACCTGGCTCAGATGAAGTTTTTAGGCTCAGATGATCGGCTGACCCTCTCCTTTGCTCCACGAACACACACTCTCAAGAGCTCAGGCCGCATAAGCGATGTGTTTCTCTGTCGCCACGAGAAGGTCTTCCACCCCAACAAGGGCTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024633:ENSBTAT00000017388:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0045422=PI3_PI4_kinase=PD(4.7=27.0)
A:
NA
C2:
PF0078719=PX=PU(17.7=29.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTTGTCCTGTGGGATCCCT
R:
TGTTGGGGTGGAAGACCTTCT
Band lengths:
304-1194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development