MmuINT0119720 @ mm9
Intron Retention
Gene
ENSMUSG00000026447 | Pik3c2b
Description
phosphoinositide-3-kinase, class 2, beta polypeptide [Source:MGI Symbol;Acc:MGI:2685045]
Coordinates
chr1:134996182-134997503:+
Coord C1 exon
chr1:134996182-134996291
Coord A exon
chr1:134996292-134997301
Coord C2 exon
chr1:134997302-134997503
Length
1010 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACA
5' ss Score
8.92
3' ss Seq
TGTTTCCCATGCTCAAACAGGTT
3' ss Score
9.64
Exon sequences
Seq C1 exon
ATGCTGTCCTGTGGAATCCCCGAGCTCTCAGACCTGGAGGACCTCAAGTATGTGTATGATGCCCTGAGACCTCAGGACACAGAGGCCAATGCCACCACCTACTTCACAAG
Seq A exon
GTAACACGCAGCACAAACCAGCACTGCCACCTAAGTAGTCCATTGGCTGCCTGCCAGGCTGGCAGGAGCAGGCTGGGCAGTGGGACAGGCTTAGCCCAAACGTTAAGGCCAGGGCTTGGATCTGCTATCCCCATTTTTGCCTTGGTAATCAGTTTGTTCCTGTCTGCATTCTGAGGCCAATATGTATAAGTAGCCCAGGCTGTCCTGGAACTCTCTCTATAGACCAGGATGGCCTCAGACTCAGAGATCTGTCTGCCTCTGCTTCCCAAGTGCTAGGATTGAAGGCATGTGCCACCACTGCCTGTCTCTTATTTGTCTCTTTACCAGGTCCCAACCACCGACTTTGTCTAGGAGTCAGGGTGGAAGCTGGATTTTATTAAAAGGTTTTAGTTTTAGTTTTTCAAGACAGGATCTTCCTGTGTAGCCCTGGCTGTCCTGGAACCTGTTCTGTAAACTAGGCTAGTCTTGAAGGAACTCTGAGATCCACCTGCCTCTGCTGGAATTAAAGGTGTGAGCCCCCACATCCAGTTTATAATCCTTCTTTTGGTCAGACTCTGGCTCTTCCACCAGACCTCACATAGAATTTAGTGTTTTTGAGCAGGGCCTAGTGTGGTCCTTGAATTCCATTTGATAGTACTAGGTGGGCATGTGCTGTTCCAAGTTTCCCTCGTCCCTTGGCAGGAGGGACAGGAACTCAGGATTCACAGACATAAACTACATGAGGTGATTGCGTCAATCAGGTGCTCTGAGACTATTACATTGGGAAGATAATTCAATCTGGTGGTTGTTTTTAGGACTCAGGGCTTGATAGCACACACCTGTCATCCTGGTACTTAACTTGAGGCAAGAGGATCACCATGAATTTGAAGCTAGGCTACACAGTGAGATCCTGTCCCCCTCCCTCAAAGAAGAAAAGAAATCTCAGGGTTTACAATATCTGCTTGGGCAGCTGTCAAGGCAAAGGCAGGTTGGGTCCCTGGCTGCATCCCCTGTTTCCCATGCTCAAACAG
Seq C2 exon
GTTGATTGAGTCCAGCCTGGGCAGCGTAGCCACGAAACTCAACTTTTTCATCCATAACCTGGCTCAGATGAAGTTCACAGGCTCAGATGACCGGCTGACCCTCTCCTTCGCTCCCCGGACACACACTCTCAAGAGCTCTGGCCGCATCCGAGATGTCTTCCTCTGCCGACATGAGAAGATCTTCCACCCCAGCAAGGGCTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026447-Pik3c2b:NM_001099276:26
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0045422=PI3_PI4_kinase=PD(4.6=27.0)
A:
NA
C2:
PF0078719=PX=PU(17.7=29.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCTGTCCTGTGGAATCCCC
R:
TGCTGGGGTGGAAGATCTTCT
Band lengths:
304-1314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: