MmuINT0119720 @ mm10
Intron Retention
Gene
ENSMUSG00000026447 | Pik3c2b
Description
phosphoinositide-3-kinase, class 2, beta polypeptide [Source:MGI Symbol;Acc:MGI:2685045]
Coordinates
chr1:133099605-133100926:+
Coord C1 exon
chr1:133099605-133099714
Coord A exon
chr1:133099715-133100724
Coord C2 exon
chr1:133100725-133100926
Length
1010 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACA
5' ss Score
8.92
3' ss Seq
TGTTTCCCATGCTCAAACAGGTT
3' ss Score
9.64
Exon sequences
Seq C1 exon
ATGCTGTCCTGTGGAATCCCCGAGCTCTCAGACCTGGAGGACCTCAAGTATGTGTATGATGCCCTGAGACCTCAGGACACAGAGGCCAATGCCACCACCTACTTCACAAG
Seq A exon
GTAACACGCAGCACAAACCAGCACTGCCACCTAAGTAGTCCATTGGCTGCCTGCCAGGCTGGCAGGAGCAGGCTGGGCAGTGGGACAGGCTTAGCCCAAACGTTAAGGCCAGGGCTTGGATCTGCTATCCCCATTTTTGCCTTGGTAATCAGTTTGTTCCTGTCTGCATTCTGAGGCCAATATGTATAAGTAGCCCAGGCTGTCCTGGAACTCTCTCTATAGACCAGGATGGCCTCAGACTCAGAGATCTGTCTGCCTCTGCTTCCCAAGTGCTAGGATTGAAGGCATGTGCCACCACTGCCTGTCTCTTATTTGTCTCTTTACCAGGTCCCAACCACCGACTTTGTCTAGGAGTCAGGGTGGAAGCTGGATTTTATTAAAAGGTTTTAGTTTTAGTTTTTCAAGACAGGATCTTCCTGTGTAGCCCTGGCTGTCCTGGAACCTGTTCTGTAAACTAGGCTAGTCTTGAAGGAACTCTGAGATCCACCTGCCTCTGCTGGAATTAAAGGTGTGAGCCCCCACATCCAGTTTATAATCCTTCTTTTGGTCAGACTCTGGCTCTTCCACCAGACCTCACATAGAATTTAGTGTTTTTGAGCAGGGCCTAGTGTGGTCCTTGAATTCCATTTGATAGTACTAGGTGGGCATGTGCTGTTCCAAGTTTCCCTCGTCCCTTGGCAGGAGGGACAGGAACTCAGGATTCACAGACATAAACTACATGAGGTGATTGCGTCAATCAGGTGCTCTGAGACTATTACATTGGGAAGATAATTCAATCTGGTGGTTGTTTTTAGGACTCAGGGCTTGATAGCACACACCTGTCATCCTGGTACTTAACTTGAGGCAAGAGGATCACCATGAATTTGAAGCTAGGCTACACAGTGAGATCCTGTCCCCCTCCCTCAAAGAAGAAAAGAAATCTCAGGGTTTACAATATCTGCTTGGGCAGCTGTCAAGGCAAAGGCAGGTTGGGTCCCTGGCTGCATCCCCTGTTTCCCATGCTCAAACAG
Seq C2 exon
GTTGATTGAGTCCAGCCTGGGCAGCGTAGCCACGAAACTCAACTTTTTCATCCATAACCTGGCTCAGATGAAGTTCACAGGCTCAGATGACCGGCTGACCCTCTCCTTCGCTCCCCGGACACACACTCTCAAGAGCTCTGGCCGCATCCGAGATGTCTTCCTCTGCCGACATGAGAAGATCTTCCACCCCAGCAAGGGCTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026447:ENSMUST00000077730:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0045422=PI3_PI4_kinase=PD(4.6=27.0)
A:
NA
C2:
PF0078719=PX=PU(17.7=29.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCTGTCCTGTGGAATCCCC
R:
TGCTGGGGTGGAAGATCTTCT
Band lengths:
304-1314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types