GgaINT0141673 @ galGal4
Intron Retention
Gene
ENSGALG00000000623 | PIK3C2B
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:HGNC Symbol;Acc:HGNC:8972]
Coordinates
chr26:1734969-1735376:-
Coord C1 exon
chr26:1735267-1735376
Coord A exon
chr26:1735171-1735266
Coord C2 exon
chr26:1734969-1735170
Length
96 bp
Sequences
Splice sites
5' ss Seq
CAGGTATAG
5' ss Score
8.73
3' ss Seq
AACACGTGGCCTTGTTGCAGGTT
3' ss Score
6.79
Exon sequences
Seq C1 exon
ATGCTGTCCTGTGGCATCCCTGAACTTTCCGACCTGGAGGACCTCAAATATGTCTACGATGCACTAAGGCCGCAGGACACCGATGCTGATGCCACCACCTACTTCACCAG
Seq A exon
GTATAGGATGTGGGTTGGTGACTCCCAGGAGGGAGGCATGGCCACCAGCTGCTTCTCGACCAAGTGCCTCCATGCTAACACGTGGCCTTGTTGCAG
Seq C2 exon
GTTGATCGAGTCCAGCTTGGGCAGCGTGGCCACCAAGCTCAACTTCTTCATCCACAACCTGGCGCAGATGAAGTTCACGGGCTCTGATGCCCGCCCAACCCTCTCCTTTGCCCCTCGCACACACACCATCAAGACGTCCGGCCGGATCTGTGATGTCTTCCTCTGCCGCCATGAGAGGGTCTTCAACCCCAGCAAGGGCTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000623:ENSGALT00000000884:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0045422=PI3_PI4_kinase=PD(4.6=27.0)
A:
NA
C2:
PF0078719=PX=PU(17.0=27.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCCCTGAACTTTCCGACC
R:
GAACTTCATCTGCGCCAGGTT
Band lengths:
173-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]