GgaINT0141673 @ galGal3
Intron Retention
Gene
ENSGALG00000000623 | PIK3C2B
Description
NA
Coordinates
chr26:1587018-1587425:-
Coord C1 exon
chr26:1587316-1587425
Coord A exon
chr26:1587220-1587315
Coord C2 exon
chr26:1587018-1587219
Length
96 bp
Sequences
Splice sites
5' ss Seq
CAGGTATAG
5' ss Score
8.73
3' ss Seq
AACACGTGGCCTTGTTGCAGGTT
3' ss Score
6.79
Exon sequences
Seq C1 exon
ATGCTGTCCTGTGGCATCCCTGAACTTTCCGACCTGGAGGACCTCAAATATGTCTACCATGCACTAAGGCCGCAGGACACCGATGCTGATGCCACCACCTACTTCACCAG
Seq A exon
GTATAGGATGTGGGTTGGTGTCTCTTAGGAGGGAGGCATGGCCACCAGCTGCTTCTCGACCAAGTGCCTCCATGCTAACACGTGGCCTTGTTGCAG
Seq C2 exon
GTTGATCGAGTCCAGCTTGGGCAGCGTGGCCACCAAGCTCAACTTCTTCATCCACAACCTGGCGCAGATGAAGTTCACGGGCTCTGATGCCCGCCCAACCCTCTCCTTTGCCCCTCGCACACACACCATCAAGACGTCCGGCCGGATCTGTGATGTCTTCCTCTGCCGCCATGAGAGGGTCTTCAACCCCAGCAAGGGCTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000623:ENSGALT00000000884:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0045422=PI3_PI4_kinase=PD(4.6=27.0)
A:
NA
C2:
PF0078719=PX=PU(17.0=27.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCCCTGAACTTTCCGACC
R:
GAACTTCATCTGCGCCAGGTT
Band lengths:
173-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]