BtaINT0111696 @ bosTau6
Intron Retention
Gene
ENSBTAG00000024633 | PIK3C2B
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:HGNC Symbol;Acc:HGNC:8972]
Coordinates
chr16:2021093-2021409:-
Coord C1 exon
chr16:2021298-2021409
Coord A exon
chr16:2021173-2021297
Coord C2 exon
chr16:2021093-2021172
Length
125 bp
Sequences
Splice sites
5' ss Seq
ACGGTTCGT
5' ss Score
7.05
3' ss Seq
ACAGGGTGCTCCTCACACAGGTG
3' ss Score
6.06
Exon sequences
Seq C1 exon
CAAGCACGCCCTGGGCAGCCACGAGTATATTCAGTACTGTCGGAAGTTCGGCATCGATATCCGGCTGCAGCTGATGGAGCAGAAGGCCGTGCGCGGTGACCTGGCCCGCACG
Seq A exon
GTTCGTGTGTGCCGGGGCGGGGGTGGGCAGACGGTGACGCGGAACATGCTGCGTGGGCCTGGGGCAGGAGCGCGGGGCTGCGGTGGAGGCAACCGCCTTTTCTGAACAGGGTGCTCCTCACACAG
Seq C2 exon
GTGAATGATGACCAGAGCCCCTCCACCTTGAACTACCTCGTCCACCTGCAAGAGAGGCCAGTCAAGCAGACCATCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024633:ENSBTAT00000017388:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0079413=PI3K_rbd=PD(28.2=76.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGGCAGCCACGAGTATAT
R:
CTGATGGTCTGCTTGACTGGC
Band lengths:
180-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development