GgaINT1021607 @ galGal4
Intron Retention
Gene
ENSGALG00000000623 | PIK3C2B
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:HGNC Symbol;Acc:HGNC:8972]
Coordinates
chr26:1742559-1742982:-
Coord C1 exon
chr26:1742871-1742982
Coord A exon
chr26:1742639-1742870
Coord C2 exon
chr26:1742559-1742638
Length
232 bp
Sequences
Splice sites
5' ss Seq
ACGGTGGGT
5' ss Score
8.27
3' ss Seq
CAGCCTCTCTCCTCCTCCAGGCC
3' ss Score
10.74
Exon sequences
Seq C1 exon
CAAGCACGCTCTGGGGAGCCATGAGTACATCCAGCACTGCAGGAAATTTGACATCGACATCCGCCTGCAGCTGATGAGGAGGAAGGCGGTGCGCAGCGACCTGGCCAGGACG
Seq A exon
GTGGGTGCCAGCACAGGGATCACCCTGAGCGCCTGCACAGGGATCCTGCCCTGATCCTGCACTCCCACCACTCCCAGGGATGCTTTGCTGGGTTAGGGGTTAGCTAATGCCAGGTGCAAGCTCCAGTGTTGGAGCTCCCAGCCCCATATCAGCCTTCTAAGGGGGGTTCCATCGTGGGAAGTGGGGCAGGAGGAATGGCACAGCACATGGCACAGCCTCTCTCCTCCTCCAG
Seq C2 exon
GCCAGCGATGACCAGAGCCCCTCCACCCTCAACCACTACATCCACCTACAGGAGAGGCCTATCAAGCAGACCATCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000623:ENSGALT00000000884:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=NA C2=0.111
Domain overlap (PFAM):
C1:
PF0079413=PI3K_rbd=PD(28.2=76.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGCACGCTCTGGGGAG
R:
TGATGGTCTGCTTGATAGGCC
Band lengths:
188-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]