RnoINT0111289 @ rn6
Intron Retention
Gene
ENSRNOG00000029938 | Pik3c2b
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:RGD Symbol;Acc:1306541]
Coordinates
chr13:49877745-49878088:+
Coord C1 exon
chr13:49877745-49877856
Coord A exon
chr13:49877857-49878008
Coord C2 exon
chr13:49878009-49878088
Length
152 bp
Sequences
Splice sites
5' ss Seq
ACGGTACGT
5' ss Score
11.34
3' ss Seq
GGCCCTGCTCACTCACTCAGGTG
3' ss Score
6.89
Exon sequences
Seq C1 exon
TAAGCACGCCTTGGGAAGCCATGAGTATATCCAACACTGCCGCAAGTTTGACATCAACATCCGACTACAGCTGATGGAGCAGAAGGCTATCCGGAGCGACCTGGCCCGGACG
Seq A exon
GTACGTGTTGGAAATGGCTGACAGTTGTACAAACCTGAGCAGGTAGAATTGGCAAAGGGTGATGCAGAACAGCTTTAGGAAGTGGGGTAGGTATCCTGGATTGAGGAAAGGACATCACCCCTGCCTGACCAGGGCCCTGCTCACTCACTCAG
Seq C2 exon
GTGAATGATGACCAGAGCCCTTCCACCTTGAACTACCTCATCCATCTTCAAGAGCGGCCAGTCAAGCAGACCATCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029938:ENSRNOT00000042125:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0079413=PI3K_rbd=PD(28.2=76.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCTTGGGAAGCCATGAGTA
R:
CTGCTGATGGTCTGCTTGACT
Band lengths:
186-338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]