DreINT0114243 @ danRer10
Intron Retention
Gene
ENSDARG00000086927 | pik3c2b
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:ZFIN;Acc:ZDB-GENE-050309-145]
Coordinates
chr11:23421144-23422173:-
Coord C1 exon
chr11:23422062-23422173
Coord A exon
chr11:23421224-23422061
Coord C2 exon
chr11:23421144-23421223
Length
838 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAAG
5' ss Score
7
3' ss Seq
ATTTTGTTGTTGCTCGACAGACT
3' ss Score
7.52
Exon sequences
Seq C1 exon
TACTCAGACTCTGGCGAGCTTTGAGTACATCCAGCAGTGTCTGAAGTTCGACTGGGACATTCGCCTCATTCTCACCAAAAGGAGTTCTGTCAACATGGAGCTCGCCCGAACG
Seq A exon
GTAAAGCCAACACTGACACTAGATGGATTAGCCAGCCAAAAACATGCTTTTCTATTGTGGAACCTGCAGGAAACAGCTGTAGGAAACCTTATGTAGACATCTTAAAATCAACAAGCTTGTACTTAATTTTGGAAGTTCTCTACAAAACCTTGAGTTGCAGGCTTGAATTATGCTTATGATACATGGGGCTACTTTTTGAGCAATGTTATATTCAGGGCATATACTTCTTCCATATAGCAAATTGGGTAGAAATCTCTATCCCTTCTTAATGGGAAAGTAGCCAAGAAAAAAATCATTAGTGTGCAATGTGCAACCATGCTGAATGCAAAACATTTTTAGAAATGCAGTCTAGAGGTGCACTTCTCCATGCAGTTCCTGAAATGCCAGACCGTTCATATTGCGTCTGACACATCCACTGTACCATCATTTAGAGTACAATACATGTAATATGTTTGGTATGCGACCTTACACCGAGATCTTGTGCTTAAGGTGTTTTCCCAGAAACATACTACACCCATTTCCTTATTTTGGATTTGGTTCTGTAGAAGCATTTCCATTGAATCGTAGGCTCTGTTTACACCTGGAAGTATTAGCCTATATTTTCGTCAATCCATCAATCAAAAGTGGACAGTGGAGACCCCTATGGACGTGATTAAAAGCGGACAAGCTTAAAATGTTTACACTCTGTTCACACTTCTACTAAGCATTGTTCGCTTGATTGATGATTAATGAAACACATCTTAACACCAGGTGTGAACAGGGCCATAGTGTAAATGCTAATAATGTTTGAGTTTTTAAATGTTTGATTTATTGAAGCGATTTTGTTGTTGCTCGACAG
Seq C2 exon
ACTGAGGATGATGATACTCCATCCACCATGAACCACAGTATTCTACTGCAAGAGAGGCCAATCAAACAGACTGTGACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000086927:ENSDART00000124810:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.105 A=NA C2=0.370
Domain overlap (PFAM):
C1:
PF0079413=PI3K_rbd=PD(28.2=76.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTCAGACTCTGGCGAGCTT
R:
GGTCACAGTCTGTTTGATTGGC
Band lengths:
190-1028
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]