BtaINT0113435 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011922 | PLEC
Description
plectin [Source:HGNC Symbol;Acc:HGNC:9069]
Coordinates
chr14:2070794-2071497:+
Coord C1 exon
chr14:2070794-2070887
Coord A exon
chr14:2070888-2071339
Coord C2 exon
chr14:2071340-2071497
Length
452 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGG
5' ss Score
8.99
3' ss Seq
GAGTCAGGGCAATTGCCTTGCAG
3' ss Score
-15.13
Exon sequences
Seq C1 exon
ACTGGAGCGTCTTCAGCGCATCGTGAGCAAGCTGCAGATGGAGGCCGGGCTGTGTGAGGAGCAGCTGAACCAGGCCGACGCCCTGCTGCAGTCG
Seq A exon
GTGAGGGCTGGGCCTGGGCAGGGGGGCTGGACGGAGGGAGGAGCCCCAAGCCCGCCACGCCCTGCAGCCGCTGCTCCTGCCTCCTGGCGTGGGGCCATCTCTGACCGCTAGATTGGGCAGAGCCAGCTCCTGGGCACCAGGCCTGCCCTGAGCCGCCTGCTGGCTGGATGTGGCAGGAGGGGACCCAGACCGCGGGTCCTGGGCTGGGGCTCTCTCAGGGAGGACTTTCTTCGGGTGGGTGATGGGCGACAAGGCTGAGAAGCACTTGGCTCTGGGACCCAGTGGAGGCTTTTGCACTTGATCCCGGTCCCCACAGAGAACTGGGCCTGGGGGTTTGGCCAGAAGCCTTAGAGACACGTACAGTGCTGGCTGGGGAGGAAAGGGAAAGGACAGGCTGGGCCTGGAGGCGGGGGTGCAGGGTGGCCAGACTCTGAGTCAGGGCAATTGCCTTG
Seq C2 exon
CAGGACGTCCGGCTGCTGGCCGCAGGCAAGGCACCGCAGCGGGCGGGCGAGGTGGAGCGGGACCTGGACAAGGCCGACGGCATGATCCGGCTGCTGTTCAATGATGTGCAGGCCCTCAAGGATGGGCGGCACCCTCAGGGCGAGCAGATGTACCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011922:ENSBTAT00000015828:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.151
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGCGTCTTCAGCGC
R:
GTACATCTGCTCGCCCTGAGG
Band lengths:
246-698
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development