GgaINT0137837 @ galGal3
Intron Retention
Gene
ENSGALG00000003693 | MACF1
Description
NA
Coordinates
chr23:5641983-5642866:+
Coord C1 exon
chr23:5641983-5642076
Coord A exon
chr23:5642077-5642711
Coord C2 exon
chr23:5642712-5642866
Length
635 bp
Sequences
Splice sites
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
3' ss Seq
TCTCTCCCGTCTGCATGCAGGAT
3' ss Score
10.37
Exon sequences
Seq C1 exon
GCTGGAACTGCTGCTGCAAATCGCCAACAAAATCCAGAATGGCGCTCTGAGCTGTGAAGAAAAACTCACACTTGCAAAGAACACACTGCAAGCT
Seq A exon
GTGAGTGGGGGCTGACATTGCTATTTTCCCTTCTTCTGACTCTTCTTTCGTGTCCATCTCTGTCCATCCCGATTATTGTGGGGTGGTGAGTTCCCCTGGACAACTTTCCTTTCTGTAGGGTGTGGAGCCCATCCCAGGAGGGCTGTGGGGATGGTGGTGGGTACCTGCTGAGCCGGGGATGGACCCTGCAGGGCTACTGCGGTTCTGGGAAAGCTTTTGGCATCAGAAGGTTTAAAAAAAGCAGAAAAAAACGCTGTGTTTGTCTGAAAGAGTGGCAGAAAGGACTCACTGCAGCTACCTGTTAACTATGGAGTAGATTTCTGAAGAGGAAGTGTTTTGTTCTGGAAGATGGAGGTGCAGGGTCTGGAAGCTGGCTGGTTAAACCCAACCAAGAGGAGAGGTGCCATGCAAGGGACAGTCACTGCACGGGGCGTCTCTGTCAGTTTTAGGTTTGTCTGCAGGAGCTTTTCTGAAGGCAATGTCCTGAGTGAGGTGTGAGTTCTGACAGACAACCATAACTGAGCGTAGGGGTGAAGAGGTCCTTTTAGTGCTGGAGTCAGTGCTGGGTTTCTGTTCTCTCTGCCCGCGTGTCAGGGCTGGGGGAGCAGCCCTCAGTCTCTCCCGTCTGCATGCAG
Seq C2 exon
GATGCTGCCCACCTGGAGGCCGGCCAGCCGGTGCAGTACGAGGCCGACGTCGTGGTGTACCTGCAGGAGTGCGAGGGGCTGATCCGCCAGCTGCAGGTGGACGTGCAGATCCTCCGGGACGAGAATTACTACCAGCTGGAGGAGCTGGCGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003693:ENSGALT00000005857:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGCAAATCGCCAACAAA
R:
CTGAACGCCAGCTCCTCCAG
Band lengths:
239-874
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]