BtaINT0088373 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021024 | MACF1
Description
microtubule-actin crosslinking factor 1 [Source:HGNC Symbol;Acc:HGNC:13664]
Coordinates
chr3:107334721-107335163:-
Coord C1 exon
chr3:107335070-107335163
Coord A exon
chr3:107334876-107335069
Coord C2 exon
chr3:107334721-107334875
Length
194 bp
Sequences
Splice sites
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
3' ss Seq
ACTCTCCCTTTCTCTCTCAGGAT
3' ss Score
12.21
Exon sequences
Seq C1 exon
GCTGGAATTGCTGCTACAGATTGCAAACAAAATCCAGAATGGTGCTTTGAACTGTGAAGAAAAACTGACACTAGCTAAAAATACACTGCAGGCT
Seq A exon
GTAAGTCTGTTTCATCTCACATGTTCATGTCACATGTTTTCTACTCCTCATCCTGTGCTGTAATGGTTAACGTCAGTAGTTGAGGGATCCAGCTTCATTTGTCTTGGAATTGCAGTGGACCCCTTGGCTCCCTGGGTCCAAGTGGGTGAGAGCAGAGGGAGCTATCCCCCTCTCACTCTCCCTTTCTCTCTCAG
Seq C2 exon
GATGCTGCTCACCTGGAGTCAGGGCAGCCAGTGCAGTGTGAGTCAGATGTCATCATGTACATTCAGGAGTGTGAAGGTCTCATCAGACAGCTGCAGGTGGATCTCCAAATCCTACGAGATGAGAACTACTACCAGCTAGAAGAGCTGGCTTTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021024:ENSBTAT00000033270:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGAATTGCTGCTACAGAT
R:
TCTAGCTGGTAGTAGTTCTCATCTCG
Band lengths:
234-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]