DreINT0091792 @ danRer10
Intron Retention
Gene
ENSDARG00000028533 | macf1a
Description
microtubule-actin crosslinking factor 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3606]
Coordinates
chr19:35597592-35600182:-
Coord C1 exon
chr19:35600089-35600182
Coord A exon
chr19:35597747-35600088
Coord C2 exon
chr19:35597592-35597746
Length
2342 bp
Sequences
Splice sites
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
3' ss Seq
TGGATTGTGTCTTTCCTCAGGAC
3' ss Score
9.85
Exon sequences
Seq C1 exon
GTTGGAGTTACTCCTACAGATGGCCAATAAGATCCAGAACACGGCTTTAGATTGTGAAGAGAAACTCACGTTGGCGAAGAACACTTTGCAGGCT
Seq A exon
GTAAGTGTTTCTGTGGGTGCTGTCTGATCCATAGCCTAGTGAGCTAAACTAAATTATTGGTTTGTAACATTCTTTATTATCAGAAGTTACACCTATACAGTGCATATGAACTCTAATAGAGTCTGATGTTGGTCATTAAGCTACTTAGCACACTACTAAGTTGAAGTTGAGTTTTTTTTATACAAAATTTGAGCTTGTGCCAATATTTTTATCTGTTATGATAGTCACTGTGTCATCATGAAGTTTTGACATCAAAATACTTGTTAAGTTACGAACAAAATAAAACTGTCAGACTACATGTTGCCCTCCAACCAGTAATTGCTTGCATGAACAACAAATGTGGAGCTACTGTAGATGTGTACTGTATGTACGGAAACACTTAAACAAATAATAGTTACCAACGACTTCAGAAATCACAATAAAAGCAGGACTGTTGTTAACAGCTTCACAAACCTCACCTCCGTTGCATAATTTGACCAAGTGGCATCATCTCTATTATCATTTCTATTTACCTATTGGTCAGCTTCATAGATGTAATGGAATCCAAGCTGGAGGACAGAAATAAAATGATATATGCTAGTCTTTTTGTTGGGACTTGTTGAAGTATTCCTGTCTCAGATGTGGTGTTAGCTGTCCTTCACTATGTTTTATATATTACTACAAATAGATTTACTACAAATCACAACAATATATTTTATAAAACTATTGATTCTTGAGTTCAAACTCCATTTTTTGTTTACAAATCACCCCAACATCCCACGTCAATCTCTGCTAATTAATTTTGGGTTTTAATATTGCATAATCTAAACCTGGCACAAGAATATCCACAACAAATACAATATATTCATATTCAACATATTCAAAGCAAAATTGATGCTTTGATATACAGTACAATCACATTAAGCAGCTCACTTAAATTTGAGACCTACAGTTGAAGTCACAATTATTAGCCCTCCTGAATTTTTAGCCACCCCGTATATTCATTTCCCCAATTTCTATTTAACAGAAAGCACATTTCAACACATTTTCAAACATAATATTTTTAATAACTCATTTCTAATAACTGATTTCCTTTGTCTTTGCAATGATGACAGTACATAATATTTTAATAGATATTTTTCAAGACACTTCTACACAGCTTAAAGTGACATTTAAAGTGACATTTAAAAGTGCCAAATCATTGTATAATGATGGTTTGATCTTTAGGTAATTGAAAATAAATATTGCTTAAAGGGGGCTAATAATATTGACCTTAATATGGTTTTTAAAAAATGTTTTTATTCTAGCTTTTTTTTTAAAACTTTTTGTTTAAGCAATATATTTTTCACAGAACAACCCCTCTTCAACGGTTTACCCCTTAAACACAAGGGGATACATAAAAAAAATAATAATAATGATAAAATAATAATAATAATATTAATAATAATGATATTATTAATAATAATAATAATAATAATAATTAAAGAAAATCAATAAAAAATAATAAAAAATAAAAGGTATTTCCATTATAATTACTTCACAGGAGATACATTTGTTCATCAAGTTACATTGTGTTGCATCGTAGTTACATCCAATTACAGTGATGATAAGGTGAGGTTAAGCAACCTCTAAATATAATTATCTAAATATGTCACAACACATTTCCATCTCTTCAGAAAAATATCAGTCTTCATTTGTAGACATGCAGTCATTTTTTCCATTATAGACCTGTTTAAGTCTCTGAATCCACTGAGCCACCTTTGGAGAATTTTCTTCCATCCAATGTACTGTTATCATTTATTTTTATTTATTTATTTTTTTGCAACCAGTAATAATATCCTTAGGACAAATCTTGTTTCCTTATTAAATATTTCTTTGGGCATTGCTCCCAGTAAGCACATAACTGGATCGAGGGGTATTGCTATATCTAATATCTTATCTATTTCTTCTTTAACATTGTTCCCAAAATTCTTGAATCTTAGGACAGTCCCAAAAATGTGGGTATGATCTCCAATTTTACCACATTTTCTCCAACACAAAGCTACAAATGGTCCTTTTACATATGTAGATATTACAAAAGGAGTATTAAAGTACCTCATTTTTACTTTCCAATCAAATTCTTTCCACAATTGACTATTAACAAATAAGACTTTCTTATGAAAAATAATTATAGGAAATACTTTGAAAAATGTCTTGCTTTTTCAAACATCATTTAGAAAAGATTTGACAAATAAAAATTCAAAGGAAGGCAAATCATTTGACTTCAACTGTACATATATAGAGAAGTTCACTTTTATCTTGTGTCATGCAATTTGATATTTACTCTTCAGAAATGTACTTGATTGGATTGTGTCTTTCCTCAG
Seq C2 exon
GACATGTCTCAGCTAGAGAGCGGGCAGCCGGTGCGGTGTGAGAATGAATTGGGGATGTATCTGCAGGATTGCGAGGCTCTGGTCAGACAGCTTCACCTTGACCTGCAGGTCCTCCGAGATGAGAAGTACTACCAAGTTGAGCAGCTGGCTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000028533:ENSDART00000146394:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.019
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]