HsaINT0127066 @ hg38
Intron Retention
Gene
ENSG00000178209 | PLEC
Description
plectin [Source:HGNC Symbol;Acc:HGNC:9069]
Coordinates
chr8:143933197-143934091:-
Coord C1 exon
chr8:143933998-143934091
Coord A exon
chr8:143933352-143933997
Coord C2 exon
chr8:143933197-143933351
Length
646 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGG
5' ss Score
8.99
3' ss Seq
TCATGGCAACGACCTTGCAGGAT
3' ss Score
4.65
Exon sequences
Seq C1 exon
GCTGGAGTGTCTTCAGCGCATCGTGACCAAGCTGCAGATGGAGGCGGGGCTGTGTGAGGAGCAGCTGAACCAGGCCGACGCCCTGCTGCAGTCG
Seq A exon
GTGAGGGGGTGTGGGGCAGGCAGTGGGCGGGAGGGAGGCCGGAGGAGCCTGCCCCGCCCTGCAGCCCTAAAGCCAGGAGGGGGCTGTCCCCCTGGGCTCCTGGGGCAGGGGCAGGGGCAGGGGCGGGGCATGTGGTGGGGAATCCAGGCCTGAGCTCCTCCCTCCTCGTGTGCAGCTAACTCTCACTGCCTGCTTTGGGCAGAGTTGGTTTCTGGCCACGGGGCAGAACCCACGCTGGGCTGCCTTGCCCCCGCCAGGCCCCCTCCCCGACAGCGGCTTACTGTTAGGGGAGGGGTTGGGGGAGGGCCCAACCCACTGCTGATTGCCCAGGAGGACAGGGCCCACGTGGCATTACAGGAGGAGTTACCCAGGGTGGGTGATGGAGGATGAGGCCCAGGACCCCACAGACATGGTCATGGGGGTCTCGGTTCTTGGACTGGGCTAAGTACTCTGGACTTGGTCCCAATCCCCCAGAAGGCCAGTAGGAAGATGTGTGAGGTGGGCAGGGAGGGAAGGGGAAGGACAGGGATGGAGGCAGTGGCCCACTGAGGCTGAGGAAGCGGCTGAGGGTGGCCGTCTTGGCCGGGGCCCCTGTGAGGTCAGAGGGGGATCAGCTGTGCTCCGAGTCATGGCAACGACCTTGCAG
Seq C2 exon
GATGTCCGGCTGCTGGCTGCAGGCAAAGTGCCACAGCGGGCGGGGGAGGTGGAACGGGACTTGGACAAGGCGGATAGCATGATCCGGCTGCTCTTCAACGACGTGCAGACCCTCAAGGATGGACGGCACCCGCAGGGCGAGCAGATGTACCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178209:ENST00000322810:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.096
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGTGTCTTCAGCGCATC
R:
GCGGTACATCTGCTCGCC
Band lengths:
246-892
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development