RnoINT0113100 @ rn6
Intron Retention
Gene
ENSRNOG00000023781 | Plec
Description
plectin [Source:RGD Symbol;Acc:621649]
Coordinates
chr7:117248435-117249387:-
Coord C1 exon
chr7:117249294-117249387
Coord A exon
chr7:117248593-117249293
Coord C2 exon
chr7:117248435-117248592
Length
701 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGG
5' ss Score
8.99
3' ss Seq
AGTCACACAGGACCGTCTTGCAG
3' ss Score
-16.58
Exon sequences
Seq C1 exon
GCTGGAGTGTCTTCAGCGCATTGTGAGCAAGCTACAGATGGAGGCTGGGCTATGTGAGGAGCAGCTGAACCAGGCCGATTCCCTACTGCAGTCG
Seq A exon
GTGAGGGAGACCAGAGAGGCGGGGCGGGCGGGGAGGGGGGGGAGGCGGGGTGGGCACCTCTCCAGGCCTCAGGGAGGTAGGAGGAGCTCTGAGCTGCTTACTCTGCAGCCAGGGCTGTGGCCTGCTGGGCCTCAGGCCCAGGGTGTGGCACTAGGGCGGGAAAACCGGGCTCTTCTGGTCTGCTGCCAACCCTGACCTCCTTTTCTGAGCAGAACTGGCCTCTGGGCGCCAGGCAGGACTGTCTGCCTCTCTGATTCATTGCAGCATGACTCTCCTCATCCCCTCCCTCCTTGGGGAATGGGGAGTAGGGAGACCCCAACCTCGTGGCTGAAGAAATGCCGTGGGGTCTATAAGGCACAGGGCTGTGTGGGCCTGGGTGGGAGAAGTTATGCGTAGATGACGGAGCATGAGGCACGGGGTCTCCTGTGAACAAGCGGTGAAGGTCTCTGGCCTTGGACCTAGTGGAATCTTTTGGACAGGATCCTGAGTTCCCAGAGAGCTGATACAGAGTAGTCTAGAAGAGTGCAAGGAAGATGTGTGGGATCAGTGGGAGGGAAAGGAGTGAATGGGAATCCCAAGGCTGTGGGCCAGACAGGACCTTGATTCTTAGTCTGGGAAATGGGTGAAGGGGCAGCCTTGGTTGAGAACCCTCGGCAGCGAGTAGGAGAGTTAGCCAGGCCAAGTCACACAGGACCGTCTTG
Seq C2 exon
CAGGATATTCGGCTGCTGGCCTCAGGCAAGGCGGCACAGCGGGCTGGGGAAGTGGAGAGAGACCTGGACAAGGCTGATGGTATGATCCGGCTGTTGTTCAATGATGTGCAGACCCTTAAAGATGGGCGGCATCCACAGGGTGAACAGATGTACCGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023781:ENSRNOT00000006311:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.095
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGTGTCTTCAGCGCATT
R:
TCCGGTACATCTGTTCACCCT
Band lengths:
250-951
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]