HsaINT0127066 @ hg19
Intron Retention
Gene
ENSG00000178209 | PLEC
Description
plectin [Source:HGNC Symbol;Acc:9069]
Coordinates
chr8:145007365-145008259:-
Coord C1 exon
chr8:145008166-145008259
Coord A exon
chr8:145007520-145008165
Coord C2 exon
chr8:145007365-145007519
Length
646 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGG
5' ss Score
8.99
3' ss Seq
TCATGGCAACGACCTTGCAGGAT
3' ss Score
4.65
Exon sequences
Seq C1 exon
GCTGGAGTGTCTTCAGCGCATCGTGACCAAGCTGCAGATGGAGGCGGGGCTGTGTGAGGAGCAGCTGAACCAGGCCGACGCCCTGCTGCAGTCG
Seq A exon
GTGAGGGGGTGTGGGGCAGGCAGTGGGCGGGAGGGAGGCCGGAGGAGCCTGCCCCGCCCTGCAGCCCTAAAGCCAGGAGGGGGCTGTCCCCCTGGGCTCCTGGGGCAGGGGCAGGGGCAGGGGCGGGGCATGTGGTGGGGAATCCAGGCCTGAGCTCCTCCCTCCTCGTGTGCAGCTAACTCTCACTGCCTGCTTTGGGCAGAGTTGGTTTCTGGCCACGGGGCAGAACCCACGCTGGGCTGCCTTGCCCCCGCCAGGCCCCCTCCCCGACAGCGGCTTACTGTTAGGGGAGGGGTTGGGGGAGGGCCCAACCCACTGCTGATTGCCCAGGAGGACAGGGCCCACGTGGCATTACAGGAGGAGTTACCCAGGGTGGGTGATGGAGGATGAGGCCCAGGACCCCACAGACATGGTCATGGGGGTCTCGGTTCTTGGACTGGGCTAAGTACTCTGGACTTGGTCCCAATCCCCCAGAAGGCCAGTAGGAAGATGTGTGAGGTGGGCAGGGAGGGAAGGGGAAGGACAGGGATGGAGGCAGTGGCCCACTGAGGCTGAGGAAGCGGCTGAGGGTGGCCGTCTTGGCCGGGGCCCCTGTGAGGTCAGAGGGGGATCAGCTGTGCTCCGAGTCATGGCAACGACCTTGCAG
Seq C2 exon
GATGTCCGGCTGCTGGCTGCAGGCAAAGTGCCACAGCGGGCGGGGGAGGTGGAACGGGACTTGGACAAGGCGGATAGCATGATCCGGCTGCTCTTCAACGACGTGCAGACCCTCAAGGATGGACGGCACCCGCAGGGCGAGCAGATGTACCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178209-PLEC:NM_201378:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.096
Domain overlap (PFAM):
C1:
PF032349=CDC37_N=FE(22.3=100)
A:
NA
C2:
PF032349=CDC37_N=FE(36.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGTGTCTTCAGCGCATC
R:
GCGGTACATCTGCTCGCC
Band lengths:
246-892
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)