MmuINT0121761 @ mm9
Intron Retention
Gene
ENSMUSG00000022565 | Plec
Description
plectin [Source:MGI Symbol;Acc:MGI:1277961]
Coordinates
chr15:76019687-76020625:-
Coord C1 exon
chr15:76020532-76020625
Coord A exon
chr15:76019842-76020531
Coord C2 exon
chr15:76019687-76019841
Length
690 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGG
5' ss Score
8.99
3' ss Seq
CACTCAGGACGGTCTTGCAGGAT
3' ss Score
4.2
Exon sequences
Seq C1 exon
GCTGGAGTGTCTTCAGCGCATTGTGAGCAAGCTACAGATGGAGGCTGGGCTGTGTGAGGAGCAGCTGAACCAGGCGGACGCCCTACTGCAGTCG
Seq A exon
GTGAGGGAGAGAAGAGAGGCGGGGCAAGGGGTAGGGTGGGCACCCCTCCAGGCCTGAGGGAGGTAGGAGGAGCATCGGGCTGCTTACTCTGCAGCCAGGGTTGTGGCCTGCTGGGCTACAGGCCCAGGGTGTGGCACTAGGGCGGGAAAACCGGGCCCTTTTGGTCTGCTGCCAACCCTGACCTCCTTTTGTGAGCAGAACTGGCCTCTGGCCACCAGGCAGGACTGTCTGCCTCCCTGCTTCATTCCAGCGTGGCCCTCATCCCCTCCTTCCTCAGAGAGTAGGGAGTAGGGAGACCCCAGCCTCATGGCTAGATGAGGGCTTTGGGGTCCATAAGGCACAGGGCTGTGTGAGCCTGGGTGGGAGAAGTTATGTGGTAGGTGATGGAGCTTGAGGCACAGAGTCTCCTGTGAACAAAGCTGGGACAGTCTCTGTCCTTGGACCTAGTGGGAATCTTTTGAACAGGATCCTGAGTCCCGGGAGAACTGATACAGATTAGTCTAGAAGCGTGCTAGGAAGATGTGTGGGCTCACTGGGAGGGAAAGGAGTGAATGAGAATCCAAGGCTGTGAGCCACACGGGACCTTGATTTTTAGGCTGGGGGAAGGGGTGAAGGGGCAGCGTTGGTTGAGAACCCTAGGCAGTGAGTAGGAGAGTTAGCCAGGCCAAGTCACTCAGGACGGTCTTGCAG
Seq C2 exon
GATATTCGGCTGCTGGCCTCAGGCAAGGTGGCTCAGCGAGCTGGGGAAGTCGAGAGAGACCTGGACAAGGCTGATGGTATGATCCGGCTGTTGTTCAATGATGTGCAGACCCTTAAAGATGGGCGGCATCCACAGGGTGAACAGATGTACCGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022565-Plec:NM_001164203:14
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.096
Domain overlap (PFAM):
C1:
PF032349=CDC37_N=FE(25.0=100)
A:
NA
C2:
PF032349=CDC37_N=FE(41.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
ENSMUSP00000023226, ENSMUSP00000057158, ENSMUSP00000071765, ENSMUSP00000072478, ENSMUSP00000073124f1277A, ENSMUSP00000074383, ENSMUSP00000075693, ENSMUSP00000075772, ENSMUSP00000079668, ENSMUSP00000087037, ENSMUSP00000126068, ENSMUSP00000126526, ENSMUSP00000126912, ENSMUSP00000126936, ENSMUSP00000127253, ENSMUSP00000127261, ENSMUSP00000127867, ENSMUSP00000129543, ENSMUSP00000130915
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGTGTCTTCAGCGCATT
R:
TCCGGTACATCTGTTCACCCT
Band lengths:
247-937
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: