BtaINT0113452 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011922 | PLEC
Description
plectin [Source:HGNC Symbol;Acc:HGNC:9069]
Coordinates
chr14:2066779-2067748:+
Coord C1 exon
chr14:2066779-2066868
Coord A exon
chr14:2066869-2067670
Coord C2 exon
chr14:2067671-2067748
Length
802 bp
Sequences
Splice sites
5' ss Seq
CTGGTACGT
5' ss Score
9.57
3' ss Seq
CCGGCGTGCTACCCTTGCAGCCG
3' ss Score
8.64
Exon sequences
Seq C1 exon
GCTCAGAGGCACATCAGTGACCTGTATGAAGACCTCCGTGATGGCCACAACCTCATCTCCCTCTTGGAGGTGCTCTCTGGGGACAGCCTG
Seq A exon
GTACGTGTGTCTGCCCGCCCCTCTGCGACCCTGCCTGCCTTCCCTCCTAGCGTCTCACCAGTGACCCCCACCCCCAACTCTGTGTCCGGCCTGGCCTCAGCCCCCTGTGCCTCCTGGTCAGTGTGCATCCTGGCCTGGGAGCCGCCTGACCCCTGTGCCTGGGCACACGGCCCCGCCGCCCACCGTGCTCAAGCCTTGACACTGTAACCTCATGCTCTGCTCTGCTTTGGTTTCTCTGCTGCTTGGACTCTGAACTTTGACCTCTGCCCTTTACCCTTTGCCCTGCTCTGGCCGGGCAGCCAAGAGAGCGGGACGTAATCAGGAGCTCGCGCCTGGTGAGTGGATGTGCCCGCTGGCCATGGCAGCACGTGGGCTCCAGGAGCCCGGCTCACCCGGCTGATGGCGCTGGGGTGGGCAGATGGCCCTGCTTCGAGCTGCCCAGCAGCCCACCTGCCACACTGTCCGGGGCCGGAAACCCACAGGGGCTGCCACCGCTGGGCAGGAGGACCCCTCCCCCAGACCACTACCCTCTGCTGGTGGCTTCCTGGCTATTGTGTCCTCCCCGCCCCCTCCTTCCTTCCCGCAGCCTGGCCTTGGACTTCCCAAACCCTTGCTGGGCCAGTGGCCCCCCTCCCAGTTGGGGTGGGTGACCCGGGGTAAGGGTCGTGGATGCCGCAGGGGCTCAGGGGTGCTGACCGGCGTGCCCTCCCTCCCAGCTGGGGTGGGTGACCCGGGGTAAGGGTCGTGGATGCCGCGGGGGCTCAGGGGTGCTGACCGGCTGACCGGCGTGCTACCCTTGCAG
Seq C2 exon
CCGCGGGAGAAGGGGAGGATGCGCTTCCACAAGCTGCAGAACGTGCAGATCGCCCTGGACTACCTGCGTCACCGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011922:ENSBTAT00000015828:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.029
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(28.7=100)
A:
NA
C2:
PF0030726=CH=FE(24.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development