GgaINT0137828 @ galGal3
Intron Retention
Gene
ENSGALG00000003693 | MACF1
Description
NA
Coordinates
chr23:5631054-5633801:+
Coord C1 exon
chr23:5631054-5631143
Coord A exon
chr23:5631144-5633723
Coord C2 exon
chr23:5633724-5633801
Length
2580 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
AGCTCCCACCTCTTTTGCAGCCC
3' ss Score
7.59
Exon sequences
Seq C1 exon
GTGCGTAAGCACATCAATGACCTCTATGAGGACCTGCGGGACGGCCACAACCTCGTCTCGCTGCTGGAGGTGCTGTCGGGCGTGAAGCTG
Seq A exon
GTGAGTGCAGTGCTGTGCCCCCGCCTTCCCGTCCTCCAGTGCCTTCACAGCCATTCCTTATACCATAGTTCTGTTTCCAAACGTGCATCGGTTTCTTTGGTTGTCATTTTGTTGATTTTTCTTTCAACCCTGCTCTCCTCCTGCTCTCCTGGATTCCACCATAGCCGTCAGTTTGGGGTGCCCTGCACACAGCCCTCTCCCCAGGGGGGATTTCTGCCCTCCTCCTCCAGATCTCGCTTTGTACTGAAGTTGCTGGATGGCGATGGCTTTGACAGGAGCTATTCCTGTGACGTGTGCTTGGTTCAGCCCAGCCTCACAGCCCATCTGTGCCCCGGAGCTGGTGTGCAGAGCTCTCTTCTCACATCTCAGGCATCACAGACCCCCCTCTGCCCTCCTCCTCCTTTGCAGACTGTCACACTACTGAGCTGTAGTGGTGCAACAGCGTAGCGCAGCAGGAACTGCTGCAGCATTCCCTAAAATAGGATCTGGGCAGAGTTCTTTAACTCTCTCCATCGCCCTCCTGGGATGCCCATGAGCTGCTGTGGGGCTGCAGAGCCGAAGGAAGCTCTGGGACCCAGACGGCCTTCCTTTTCCTTTTGGCTTCAGGGCTGCCGGGAGGTTGCTCTGTGTCCCATCCCCTACACCCTCCTCGAGCCCCGGGGCCGGCGGTGTCCAGGAGAGGCAGTGAGGACCCCATGGGGCGCACCTTTCTGTTGGGTTTTCCTTTCGCTGGGTGTTGCATTTTGGTTTCCATTCTGTCTCCCTGTGTGTGTCCCCCTCCATCGGTACCTGTTAGCAAATAGAGCCGCCAGCTCAGAGGAGCCTCCGCCTGGTGAAAGCGCCGGCCTGGTGCCGTGCCAGCAGCGAGGAGCGGGAGGAGGAGGAAGATGATGATGAAGAAGTAGGTCGAGTTGGCCCGGAGCCGGCGCTGCAGTGGCAGCAGAAAGCCCAGCGCGATGCCGCGAGGCGCTGACCTTCCCTCCCTGGGGCACCACGGGGCTGTTCTGTACATCCCCAGTGCTGGCAGCGGAGGAGCGGAGCGCTGGCTGGGCTGTCTGCGTGCACGCGGGGCTGGAATGGGGTCTGCACGCTCCCACAGACCCCACCTGGGTCCCTGCTCAGCCTGGAGTGCTGTCTGCTAACCCCACTGCATGGCACGCGCCGGCACGGGCACTGGGTGGCAGTGGGGCCGGATGGCCCCATGCATGTGAATGAGATGAGAGTGAAACCTAACGGGGCCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTAACGGGGCCCAACCACGCCTGCAGTGTACAGACAGACTCCCCCACCCCCCTTGGCTAAGAAGATGGATTTCCCAGCCCTGTGCTATTTGTGCAGTGACTGTGAGAGCTGTGGGTGCAGCCCCCCTCCCCCCGAGCTGTTCCTCCTGCAGTGGTGGCTCTGCCCCTGCAGCTCCATCCTTGGCCAGCACTCCTCTGCTGGGGTACCTCACTGCTCCCGAGGGTTCAAACACAGCACTGTGGCTCCAGCATGGGAGGAGCTGGGCCCACACCTCGCCTCGGGCTGTCATTTGGAGACCAGCAGTTGATCCCTGACACAAAACCCCTGGGGCTGAGCTGGTTGTGCCCCAATGCTGGGAGTGGCTCGGAGCCTCACTGCAAGGACTTTCTGGGCTGTGGAGTGGCCCAGAGCTCATCCCCAGCAGAGCATCTTCCGGGGCCTTCCCAGCTCTGTGAGCTCTGTGGGGGCTTTTCCCTCTTTCAGCAGGATTTCACCTGGCCATGACTTTATTCACCTCCAGAACAAGGAAATGGTGCAGAGCGCATTGTGTGCACGGGGGCACAGTGGGGTGCAGGCAGCATGCGGGGTGTGCAGTGCAGTGCAGTGTGTGCAGTGCGGGCGCTGCATCCCCACAGGGCAGCCCTGCAGCTCCCACCTCTTTTGCAG
Seq C2 exon
CCCCGCGAGAAGGGCCGGATGCGATTCCACAGACTGCAGAACGTGCAGATCGCACTGGATTTCCTGAAGCAGCGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003693:ENSGALT00000005857:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.038
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(28.7=100)
A:
NA
C2:
PF0030726=CH=FE(24.8=100)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]