HsaINT0127085 @ hg19
Intron Retention
Gene
ENSG00000178209 | PLEC
Description
plectin [Source:HGNC Symbol;Acc:9069]
Coordinates
chr8:145011333-145012408:-
Coord C1 exon
chr8:145012319-145012408
Coord A exon
chr8:145011411-145012318
Coord C2 exon
chr8:145011333-145011410
Length
908 bp
Sequences
Splice sites
5' ss Seq
CTGGTACGT
5' ss Score
9.57
3' ss Seq
CTGACTGTGCCTCCCCACAGCCC
3' ss Score
11.05
Exon sequences
Seq C1 exon
GCCCAGAGGCACATCAGTGACCTGTATGAAGACCTCCGCGATGGCCACAACCTCATCTCCCTGCTGGAGGTCCTCTCGGGGGACAGCCTG
Seq A exon
GTACGTGTGCCCCTGCCCCCTCCGGGCCCCGCCTGCCCCACCTGGAGACCTCTGCCTGCCTTCCCTCCTTGGGGCCTCTCCGGCCGCCCACTCTACTTGGAATCCAGCTCAACCCCTCCTGCCTTCTCCCTGGGGGCAGGCTGGCCTCGTCCCTGGCAGCACCTCCCGCCCAGGCTGCTGGGCATCACAGCCGAGGGCCTGGCCTGGGAGTGGCCGCAACCCTCGGACCTCGGCTGCTCTGGGCCTTGCCGCCCTCCGCGTCGGGACACAGTAACCTCATGCTCCGCTTTGCTTTGGTTTCTCTGCTGCTTGGACTCTGAACCTTGACCTCTGCCCTTTACCCTTTGCCCTGCTCTGGCCGGGCAGCCGAGGGAGCGGGACGTAAGCAGGAGCTCACGCCTGGTGAGTGGCTGTGCCTGCCGGCTGCAGCGGCACGGGAGCTCCCCAAGACCGTGGAGCCCGGCTTTCTGGGGGCTGGTGGCCCGTCGGCCAACCCCTGCCTGGCTCTTGGGCGGGTAGGTGGTTGGGTGTCAAGCTGCCCGTCCACCGTGCTGCCCAGAGCTGGCCTGGGACCCACCGGTGGCTGCTGTGGCTGCCACCGCCAGGCAGGAGGACCCCCCCTTTAGTGCCACTGCCCTCCACACGAGGCTTCCTGGCTATTGTCTCCTCCCACCCCTTCCTTCCTTCCCTCAGCCTGGGTCGCTGGACTTCCCGAGCCCTGATGGGCCTGGCCTGGCCCCTGGGCCGGTGGCCTCCCTTTCCCTGCGGGGGAGGGTGAACCTGGGATGAGGGGCTGCTGCCCCCTGGGGAAGACCCTTGGCTCGGTTGCTGCGGCGCTTTGGGGCATGCTGAGGGTGGGGCCCGGGAGCTGCAGCTGCACTGTGGGTGCTGACTGTGCCTCCCCACAG
Seq C2 exon
CCCCGGGAGAAGGGGAGGATGCGTTTCCACAAGCTGCAGAATGTCCAGATTGCCCTGGACTACCTCCGGCACCGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178209-PLEC:NM_201378:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.014
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(28.7=100)
A:
NA
C2:
PF0030726=CH=PU(37.3=95.0)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)