RnoINT0113119 @ rn6
Intron Retention
Gene
ENSRNOG00000023781 | Plec
Description
plectin [Source:RGD Symbol;Acc:621649]
Coordinates
chr7:117252551-117253508:-
Coord C1 exon
chr7:117253419-117253508
Coord A exon
chr7:117252629-117253418
Coord C2 exon
chr7:117252551-117252628
Length
790 bp
Sequences
Splice sites
5' ss Seq
CTGGTATGT
5' ss Score
8.14
3' ss Seq
TGAGCCTTGCCTCCTCTCAGCCC
3' ss Score
6.21
Exon sequences
Seq C1 exon
GCTCAAAGGCACATCAGTGACCTGTATGAAGACCTCCGTGATGGCCACAACCTCATCTCCCTGCTGGAAGTCCTCTCAGGAGACAGCCTG
Seq A exon
GTATGTGTGTCTGTCCCTGCCTTTCTTCCTTCCTTGGGGCCTTCCCCTTTGACCCACTCCGTGTCCAGCTCGGTCTCTCACCTTCTCCAGCCCCAACCGCTCCTTCACAGCCAAGGCGTTGGCATTATAGCCTAAGGCCAGGCCTATCGGCAGCCATGACCCCCGCTGTTCTCCGCTATAACACAGTAACCTCATGCTCTGCTCTGCTTTGGTTTCTCTGCTGCTTGGACTCTGAATCTTGACCTCTGCCCTTTACCCTTTGCCCTGCCCTGCTGGGCAGCCGAGGGAGCGGGACGTAATCAGGAGTGTACGCCTGGTGAGTGGTTGTGCCTGTTGACATGGCGGCACCTGGGCTTCCCAAGACTGTGGAGCCCGCCCAACTCACCTGGGGATTGCGGCCAGTCCAATCTGGCTGTGTGTCAAGCTGCCTGCTGTCCTCCATGCTGCCTACCTGGGGCTGGGCCAGAGACTCACAAGAAGCTGCAGTGGGTACCACTGAGGACCCCACCCACCCAATGCCACTGCCCTCCGCCTGTGGCTTCCTGGCTATTGTCTCCTTCCCACTCCCTTCCTTCCTTCCCACAGCCAGGGTGGCAGGTTTCCCGAGCCTGCCCCTGGGCTGGTGGTCATCCAGCTACAGAGGGTGAACCTGGGATCATGGAGGGACTGTTGATGCACTAGGCGGGGACCCTTGGTTTAGTTGGTGCTGCTGCTCTGGGGGTGACTGGAGGGTTGGGCCTTGAAGCAACTATTGCCCTGTGGACTCTAACTGAGCCTTGCCTCCTCTCAG
Seq C2 exon
CCCCGAGAGAAGGGGAGGATGCGTTTCCACAAGCTGCAAAACGTTCAGATTGCCCTGGACTATCTCCGACATCGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023781:ENSRNOT00000006311:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.004
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(28.7=100)
A:
NA
C2:
PF0030726=CH=FE(24.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]