RnoEX0066904 @ rn6
Exon Skipping
Gene
ENSRNOG00000023781 | Plec
Description
plectin [Source:RGD Symbol;Acc:621649]
Coordinates
chr7:117252551-117253508:-
Coord C1 exon
chr7:117253419-117253508
Coord A exon
chr7:117253103-117253138
Coord C2 exon
chr7:117252551-117252628
Length
36 bp
Sequences
Splice sites
3' ss Seq
TGCCCTGCCCTGCTGGGCAGCCG
3' ss Score
6.48
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GCTCAAAGGCACATCAGTGACCTGTATGAAGACCTCCGTGATGGCCACAACCTCATCTCCCTGCTGGAAGTCCTCTCAGGAGACAGCCTG
Seq A exon
CCGAGGGAGCGGGACGTAATCAGGAGTGTACGCCTG
Seq C2 exon
CCCCGAGAGAAGGGGAGGATGCGTTTCCACAAGCTGCAAAACGTTCAGATTGCCCTGGACTATCTCCGACATCGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023781_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.004
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(28.7=100)
A:
PF0030726=CH=FE(9.7=100)
C2:
PF0030726=CH=FE(24.8=100)
Main Inclusion Isoform:
ENSRNOT00000006311fB10873
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGATGGCCACAACCTCATC
R:
GTCCAGGGCAATCTGAACGTT
Band lengths:
114-150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]