BtaEX0027492 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011922 | PLEC
Description
plectin [Source:HGNC Symbol;Acc:HGNC:9069]
Coordinates
chr14:2066779-2067748:+
Coord C1 exon
chr14:2066779-2066868
Coord A exon
chr14:2067168-2067203
Coord C2 exon
chr14:2067671-2067748
Length
36 bp
Sequences
Splice sites
3' ss Seq
GCCCTGCTCTGGCCGGGCAGCCA
3' ss Score
5.85
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GCTCAGAGGCACATCAGTGACCTGTATGAAGACCTCCGTGATGGCCACAACCTCATCTCCCTCTTGGAGGTGCTCTCTGGGGACAGCCTG
Seq A exon
CCAAGAGAGCGGGACGTAATCAGGAGCTCGCGCCTG
Seq C2 exon
CCGCGGGAGAAGGGGAGGATGCGCTTCCACAAGCTGCAGAACGTGCAGATCGCCCTGGACTACCTGCGTCACCGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011922_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.583 C2=0.029
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(28.7=100)
A:
PF0030726=CH=FE(9.7=100)
C2:
PF0030726=CH=FE(24.8=100)
Main Inclusion Isoform:
ENSBTAT00000015828fB5305
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGCCACAACCTCATCTCC
R:
CAGGTAGTCCAGGGCGATCTG
Band lengths:
117-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development