MmuEX0035675 @ mm10
Exon Skipping
Gene
ENSMUSG00000022565 | Plec
Description
plectin [Source:MGI Symbol;Acc:MGI:1277961]
Coordinates
chr15:76193410-76194430:-
Coord C1 exon
chr15:76194341-76194430
Coord A exon
chr15:76193966-76194001
Coord C2 exon
chr15:76193410-76193487
Length
36 bp
Sequences
Splice sites
3' ss Seq
GCCCTGCTCTGGCTGAGCAGCCG
3' ss Score
3.68
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GCTCAGAGGCACATCAGTGACCTGTACGAAGACCTCCGTGATGGCCACAACCTCATCTCCCTGCTGGAAGTCCTCTCAGGAGACAGCCTG
Seq A exon
CCGAGGGAGCGGGACGTAATCAGGAGTGTGCGCCTG
Seq C2 exon
CCCCGCGAGAAAGGGAGGATGCGCTTCCACAAGCTGCAGAATGTGCAGATTGCCCTGGACTATCTCCGACATCGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022565_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.008
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(28.7=100)
A:
PF0030726=CH=FE(9.3=100)
C2:
PF0030726=CH=FE(24.8=100)
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTCCCTGCTGGAAGTCCTC
R:
TGGCGATGTCGGAGATAGTCC
Band lengths:
113-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types