DreEX0056138 @ danRer10
Exon Skipping
Gene
ENSDARG00000062590 | pleca
Description
plectin a [Source:ZFIN;Acc:ZDB-GENE-030131-8984]
Coordinates
chr19:22879249-22882128:-
Coord C1 exon
chr19:22882039-22882128
Coord A exon
chr19:22881438-22881473
Coord C2 exon
chr19:22879249-22879326
Length
36 bp
Sequences
Splice sites
3' ss Seq
CGATGCTCTTGCTGTGGTAGCCG
3' ss Score
4.42
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
GCTCAGCGGCACATCACAGACCTGTACGAGGATCTCAGAGATGGACACAACCTCATCTCGCTGCTGGAGGTGCTGTCCGGAGAGACACTT
Seq A exon
CCGAGGGAGCGAGACGTTGTCAGGAATTCGCGGTTG
Seq C2 exon
CCCAGAGAGAAGGGTCGCATGCGCTTTCACAAACTACAAAATGTACAGATCGCACTGGACTTCCTCAAACATAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062590_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.583 C2=0.004
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(28.7=100)
A:
PF0030726=CH=FE(9.7=100)
C2:
PF0030726=CH=FE(24.8=100)
Main Inclusion Isoform:
ENSDART00000090669fB4717
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACACAACCTCATCTCGCTG
R:
TGAGGAAGTCCAGTGCGATCT
Band lengths:
115-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]