HsaEX0048199 @ hg19
Exon Skipping
Gene
ENSG00000178209 | PLEC
Description
plectin [Source:HGNC Symbol;Acc:9069]
Coordinates
chr8:145011333-145012408:-
Coord C1 exon
chr8:145012319-145012408
Coord A exon
chr8:145011917-145011952
Coord C2 exon
chr8:145011333-145011410
Length
36 bp
Sequences
Splice sites
3' ss Seq
GCCCTGCTCTGGCCGGGCAGCCG
3' ss Score
6.13
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GCCCAGAGGCACATCAGTGACCTGTATGAAGACCTCCGCGATGGCCACAACCTCATCTCCCTGCTGGAGGTCCTCTCGGGGGACAGCCTG
Seq A exon
CCGAGGGAGCGGGACGTAAGCAGGAGCTCACGCCTG
Seq C2 exon
CCCCGGGAGAAGGGGAGGATGCGTTTCCACAAGCTGCAGAATGTCCAGATTGCCCTGGACTACCTCCGGCACCGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178209-'10-12,'10-11,12-12
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.000 A=0.833 C2=0.014
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(28.7=100)
A:
PF0030726=CH=FE(9.3=100)
C2:
PF0030726=CH=PU(37.3=95.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGATGGCCACAACCTCATCTC
R:
GGAGGTAGTCCAGGGCAATCT
Band lengths:
119-155
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)