BtaINT0114816 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012126 | PNPLA7
Description
patatin-like phospholipase domain containing 7 [Source:HGNC Symbol;Acc:HGNC:24768]
Coordinates
chr11:105627160-105627527:+
Coord C1 exon
chr11:105627160-105627260
Coord A exon
chr11:105627261-105627380
Coord C2 exon
chr11:105627381-105627527
Length
120 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
3' ss Seq
CTGCCTGTGTTCTTCTCCAGCCC
3' ss Score
9.75
Exon sequences
Seq C1 exon
GGGCCACAGCAGGTGCCGCCTCAGATCTGAGGGTGGTGTGTGACCGAGCCCGGGTCCTGCCACACACAGAGGAGCACCCCGGGGGCGCTGTGGCCAGCAAG
Seq A exon
GTAGGCAGCTCCCCGCCCCGCCCCCTGCGCTGGAGCTCCCTGCTGGCCCGTTTTGGGTCAGGTCCCAGGCTGGCCGGCCACCTGCACCCTTCTGATCACGCTGCCTGTGTTCTTCTCCAG
Seq C2 exon
CCCAAGAAGAGTGTGGTTGTTGCAGAGACCCCATCGGCTGTCCTCCCCAACTCGGACGGTACCTTGGACGAGTCTGTCACCAGCAAGAAGACAGACTCCATCCTCAGAGCCGCCACACAGGACCTGCTCACCCTGATGAAGCTGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012126:ENSBTAT00000016089:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.588 A=NA C2=0.429
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCCGCCTCAGATCTGA
R:
CAGCTTCATCAGGGTGAGCAG
Band lengths:
234-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development