HsaINT0128599 @ hg19
Intron Retention
Gene
ENSG00000130653 | PNPLA7
Description
patatin-like phospholipase domain containing 7 [Source:HGNC Symbol;Acc:24768]
Coordinates
chr9:140400066-140400535:-
Coord C1 exon
chr9:140400435-140400535
Coord A exon
chr9:140400213-140400434
Coord C2 exon
chr9:140400066-140400212
Length
222 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
3' ss Seq
GTATCTCCGTTCTTCTCCAGTCC
3' ss Score
7.82
Exon sequences
Seq C1 exon
GGGGCCCAGGCAGTGCCACTTCTGATCTGGGGATGGCATGTGACCGTGCCAGGGTCTTCCTGCACTCGGACGAGCACCCCGGGAGCTCCGTGGCCAGCAAG
Seq A exon
GTAGGCCCTGGCTGTCATTCTCACCCTCCGCCTGGGGCCCCACCCTCTCCGTGGCTTGCTGGTGCATTGGGGGCGCCGCCGGCTTTGGTGTCATGTGGCACCTGCAGCTTCAGGAGGCTCAGCCGGCCTTTCCGCACTGTGCGATTCAGACCTGACCACACCCTTGTGCGATGTTCCCCAACCACATCCCTTCGAATTGCCGGTATCTCCGTTCTTCTCCAG
Seq C2 exon
TCCAGGAAAAGCGTGATGGTTGCAGAGATACCCTCCACGGTCTCCCAGCACTCAGAGAGTCACACGGATGAGACCCTGGCCAGCAGGAAGTCGGATGCCATCTTCAGAGCTGCCAAGAAGGACCTGCTCACCCTGATGAAGCTGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130653-PNPLA7:NM_152286:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.731 A=NA C2=0.531
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTGCCACTTCTGATCTGG
R:
CAGCTTCATCAGGGTGAGCAG
Band lengths:
236-458
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)