DreINT0116762 @ danRer10
Intron Retention
Gene
ENSDARG00000062986 | pnpla7a
Description
patatin-like phospholipase domain containing 7a [Source:ZFIN;Acc:ZDB-GENE-070112-1812]
Coordinates
chr21:13545911-13546227:-
Coord C1 exon
chr21:13546142-13546227
Coord A exon
chr21:13546064-13546141
Coord C2 exon
chr21:13545911-13546063
Length
78 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTTT
5' ss Score
2.06
3' ss Seq
TTTGTTTTTGCGATCTACAGTCT
3' ss Score
5.74
Exon sequences
Seq C1 exon
GAGTGACAGGGAATGACCTAAACATGGCCTACGAAAGAGCCCGTGTCACCATAGATGATCCTCCATCCACTTCTGTCATTCACAAG
Seq A exon
GTGTTTTTTTTTTCCCTTAATCTGTTTCTCATTCTTAATAACTCCTCATATTAAGACATTTGTTTTTGCGATCTACAG
Seq C2 exon
TCTATTTTGAAGAAGAGTGTGACCATGCAGCACGCTCCGTCCGCTGTGATTCACTACACAGACAATGCACCACACTCTGACGTTCCTCCTAGTAAAGTGGGTGCCATTTTTCAAGCCGCCAAGAAGGATCTACTAGGGATTATTCCACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062986:ENSDART00000151547:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.483 A=NA C2=0.392
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCCGTGTCACCATAGATGA
R:
AGTAGATCCTTCTTGGCGGCT
Band lengths:
183-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]