MmuINT0123188 @ mm10
Intron Retention
Gene
ENSMUSG00000036833 | Pnpla7
Description
patatin-like phospholipase domain containing 7 [Source:MGI Symbol;Acc:MGI:2385325]
Coordinates
chr2:25002615-25003032:+
Coord C1 exon
chr2:25002615-25002715
Coord A exon
chr2:25002716-25002888
Coord C2 exon
chr2:25002889-25003032
Length
173 bp
Sequences
Splice sites
5' ss Seq
AAGGTATAT
5' ss Score
7.84
3' ss Seq
GTATCTTTGTTCTTTCCAAGTCC
3' ss Score
5.91
Exon sequences
Seq C1 exon
AAAGCCATGAGGGAGCCACCTCAGACCTGGGGATGGCATACAACCGTGCCAGGATTTTGCCACACTCTGATGAGCAACTTGGGAACTCTTTGGCCAGCAAG
Seq A exon
GTATATCCATCCATGTTCTCCTTCTTGTCCCCTGTGCTGTGTCTGTTGCCCTGTTTACTAGTGCTGTGGGTGTGGCCCAGGCTGACATCCCCAGCATCAGCAGTAGGTCATGGAGATGCACTTCTTTCCTCATCATACCTCTTTTGATGATGTGTATCTTTGTTCTTTCCAAG
Seq C2 exon
TCCAAGAAAAGTGTTGTCGCAGAGACCCCCTCTGCCATCTTCCACTACTCAGAAAATTTCAGGGATGAGACTGGGGCCTGTGGGAAGACAGATGCTATCTTCAGAGCTGCCACAAAGGACCTCCTTACCCTGATGAAGCTAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036833:ENSMUST00000045295:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.631 A=NA C2=0.039
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCCATGAGGGAGCCACC
R:
TAGCTTCATCAGGGTAAGGAGGT
Band lengths:
242-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types