GgaINT0125225 @ galGal3
Intron Retention
Gene
ENSGALG00000008736 | PNPLA7
Description
NA
Coordinates
chr17:2007714-2008862:+
Coord C1 exon
chr17:2007714-2007814
Coord A exon
chr17:2007815-2008703
Coord C2 exon
chr17:2008704-2008862
Length
889 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
TTTCTGTCTGTTCAATGCAGTCG
3' ss Score
7.3
Exon sequences
Seq C1 exon
GTACTTCCAGCGGTGCGAAGTCAGACATGGACATGGCATATGAGAGAGCCAGAGTGCACTTCAGCTCAGAAGAGGCTTCTTGCAGTCCTGTTGTGGGCAAG
Seq A exon
GTGGGTTGTTTCATTTGGAGATTCCAGCATATTTTTCCCACTGTAACTCCTTACTCTTCCTTTGAGTAATTTCAGTGTATTAATCTGTGTATGAGTTGTGACATTTGTTTATCTTGCATTGGTTTGTTCTAAACTTGCAGCATGTTTTCGGTAACTGTTCAGGTTTTTTAGTGAAGGTCTTGAAACTGTGGCATTCCCCTTGTCAAGTACAGGTGATTTCCTCATTGAGATAAGGGAAATTTCCCTTGTCACTGTTGCAACTTCTTGATTTTTAGACACTACCTTCCTCTGACTCGTGGAGGGGGTTGTTTGGAAAGGCAAATCCATCAGACCATGTTGTATCTGCGAGAGCTGCTGTACAGCAAGGAATTAGACTTGTATAAACCTGTGAACTTCCTGTTAGGCTTCCAGTCATGACTTATAAATCTTCTTGTGGTGTGCTTTATCTACAAAGGCTGATCTGGAAATAAAGAGCACAGAAATACTCTGGGACCATAACACTTTAAAAATCAAAATGTAAGAAGAAACTGCATCTCAGTTTGCCCTCAATGGTCACTTTATCTTTCTCCATCTTTGCATGCTATGTTGATGGAGTTTGAGCTCCATGAAGTTGGCAGGTTCTGGAAAGTCATGCTTTTCTCTATGACAAACTGCAATAAGTTGCTTTGTTTCGCAAGTGTCAAGCTTTGCATAAAGAAATAAGATAATGCAATGAGCAAGCTGTTGCTGTTTAGGAAACCAACCTTTTTTTTTTTTTTTTTTTCTTTTCTCCTCTCCTTAGGCCACCAGTTGTGGCTGTTGGGAGAACGTGTGATATTGAGAGTATTTGCTGGGTAGGTGCCAGTCTTAATGTTCAGACTGATGCTTGTTTTCTGTCTGTTCAATGCAG
Seq C2 exon
TCGATATTGAAGAAGACTGTGACAGTGACAAGAACCCCTTCAGTAGTTTTCCGTTACACTGATTGTGAGCTGACTGCACAGGAATCCTGTAATGGCAAACCCACCGATGCCATCTTCGAAGCAGCGAAGAAAGACCTTTCAACCCTGATGAAACTTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008736:ENSGALT00000014216:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.265 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACTTCCAGCGGTGCGAAG
R:
AGTTTCATCAGGGTTGAAAGGTCT
Band lengths:
256-1145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]