BtaINT0114839 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012126 | PNPLA7
Description
patatin-like phospholipase domain containing 7 [Source:HGNC Symbol;Acc:HGNC:24768]
Coordinates
chr11:105672593-105673200:+
Coord C1 exon
chr11:105672593-105672696
Coord A exon
chr11:105672697-105672831
Coord C2 exon
chr11:105672832-105673200
Length
135 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGC
5' ss Score
9.1
3' ss Seq
CATGTGCTGTTTACTAACAGGAG
3' ss Score
9.09
Exon sequences
Seq C1 exon
ATGAATCTGACTACCAGACTGAGTATGAGGAGGTGCTGCTGGGAGGCCCCAAGGACGCGTACGTTGACTTCCAAAGCGCCCCAGCCGACCGGGGCTCCGACTCG
Seq A exon
GTGAGCTGCCTGGACACCCTGTGCCCCTTGGCTGAGCCACGCGCGCTGAGGGCTCCAAAGCAGGCCACTGCTCCCTCCCTGCTGCCCTCCAGGGTTGCCCCACCTTGACCTTGACCATGTGCTGTTTACTAACAG
Seq C2 exon
GAGAATGAGCCCTCGCTTCGGCATCAACACTGAGGTCTGGCTTCCCCCAAAACAGCCGAGGACTCCTCAGCACCCCAGCTCTCTGACTAAGATGGGTAGAAGTTTCCACCCTGAAGCCAGCACCTCCGTGGCTCCATCTCAGAGTGCCTAGCTCCTGCAGCTCTTCCAGCCTGCCAGGGGGACCCACTGGGGCCCTGTGTGGAGTGTCACTCTGGGGCCACTCTGCCCTGGCCTCTCCTGGAGGGCCACTGGCCCTGACATCCTCTGCACACGCAGCAGTCATCGGGGCTGTGTCAGCCCTTGGGGCCTCTCCTGCTGGAGCCCTCGTGTTTCTGCTTTGCCTGTCAATAAAGGTAGATCTGATTATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012126:ENSBTAT00000016089:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.543 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTATGAGGAGGTGCTGCT
R:
CAGGAGCTAGGCACTCTGAGA
Band lengths:
242-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development